Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JMO13_RS03700 Genome accession   NZ_CP080551
Coordinates   779792..780874 (+) Length   360 a.a.
NCBI ID   WP_001548033.1    Uniprot ID   A0A0H2XJ41
Organism   Staphylococcus aureus strain HL18840     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 774792..785874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO13_RS03680 (JMO13_000736) - 775169..776239 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  JMO13_RS03685 (JMO13_000737) - 776557..777612 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  JMO13_RS03690 (JMO13_000738) - 777777..778418 (-) 642 WP_000192949.1 YigZ family protein -
  JMO13_RS03695 (JMO13_000739) fakB1 778562..779428 (+) 867 WP_000686343.1 fatty acid kinase binding subunit FakB1 -
  JMO13_RS03700 (JMO13_000740) comFA 779792..780874 (+) 1083 WP_001548033.1 DEAD/DEAH box helicase Machinery gene
  JMO13_RS03705 (JMO13_000741) - 780867..781541 (+) 675 WP_001057965.1 ComF family protein -
  JMO13_RS03710 (JMO13_000742) hpf 781602..782174 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JMO13_RS03715 (JMO13_000743) secA 782588..785119 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  JMO13_RS03720 (JMO13_000744) - 785161..785265 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42111.65 Da        Isoelectric Point: 9.8307

>NTDB_id=520409 JMO13_RS03700 WP_001548033.1 779792..780874(+) (comFA) [Staphylococcus aureus strain HL18840]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=520409 JMO13_RS03700 WP_001548033.1 779792..780874(+) (comFA) [Staphylococcus aureus strain HL18840]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XJ41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367