Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   YB51_RS05815 Genome accession   NC_022516
Coordinates   1172309..1172791 (+) Length   160 a.a.
NCBI ID   WP_002938080.1    Uniprot ID   -
Organism   Streptococcus suis YB51     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1167309..1177791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS05790 (YB51_5720) - 1168557..1169867 (-) 1311 WP_002938090.1 GntP family permease -
  YB51_RS05795 (YB51_5725) folK 1169918..1170406 (-) 489 WP_009910002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  YB51_RS05800 (YB51_5730) folB 1170403..1170765 (-) 363 WP_002938086.1 dihydroneopterin aldolase -
  YB51_RS05805 (YB51_5735) folP 1170758..1171570 (-) 813 WP_002938084.1 dihydropteroate synthase -
  YB51_RS05810 (YB51_5740) folE 1171579..1172142 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  YB51_RS05815 (YB51_5745) mutX 1172309..1172791 (+) 483 WP_002938080.1 NUDIX hydrolase Machinery gene
  YB51_RS05820 (YB51_5750) - 1172840..1173517 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  YB51_RS05825 (YB51_5755) - 1173504..1174247 (-) 744 WP_002938076.1 polyphosphate polymerase domain-containing protein -
  YB51_RS05830 (YB51_5760) - 1174440..1174742 (+) 303 WP_002938072.1 hypothetical protein -
  YB51_RS05835 (YB51_5765) - 1174763..1175029 (-) 267 WP_002938070.1 DUF2087 domain-containing protein -
  YB51_RS05840 (YB51_5770) pheT 1175084..1177483 (-) 2400 WP_022540646.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=52027 YB51_RS05815 WP_002938080.1 1172309..1172791(+) (mutX) [Streptococcus suis YB51]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=52027 YB51_RS05815 WP_002938080.1 1172309..1172791(+) (mutX) [Streptococcus suis YB51]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGGCAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775

Multiple sequence alignment