Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   KMW38_RS10210 Genome accession   NZ_CP080518
Coordinates   2182998..2183354 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain YY322     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2177998..2188354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMW38_RS10185 (KMW38_10185) fabF 2178210..2179454 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  KMW38_RS10190 (KMW38_10190) pabC 2179454..2180269 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  KMW38_RS10195 (KMW38_10195) mltG 2180275..2181324 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  KMW38_RS10200 (KMW38_10200) tmk 2181353..2181985 (+) 633 WP_003091125.1 dTMP kinase -
  KMW38_RS10205 (KMW38_10205) - 2181978..2182964 (+) 987 WP_003110200.1 DNA polymerase III subunit delta' -
  KMW38_RS10210 (KMW38_10210) pilZ 2182998..2183354 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  KMW38_RS10215 (KMW38_10215) - 2183369..2184145 (+) 777 WP_003091117.1 TatD family hydrolase -
  KMW38_RS10220 (KMW38_10220) - 2184371..2185504 (-) 1134 WP_003162178.1 aminotransferase class V-fold PLP-dependent enzyme -
  KMW38_RS10225 (KMW38_10225) - 2185590..2186228 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  KMW38_RS10230 (KMW38_10230) - 2186378..2187274 (+) 897 WP_003162179.1 radical SAM protein -
  KMW38_RS10235 (KMW38_10235) - 2187339..2187971 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=520235 KMW38_RS10210 WP_003091119.1 2182998..2183354(+) (pilZ) [Pseudomonas aeruginosa strain YY322]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=520235 KMW38_RS10210 WP_003091119.1 2182998..2183354(+) (pilZ) [Pseudomonas aeruginosa strain YY322]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449