Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   YB51_RS05440 Genome accession   NC_022516
Coordinates   1105222..1106964 (-) Length   580 a.a.
NCBI ID   WP_002935237.1    Uniprot ID   -
Organism   Streptococcus suis YB51     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100222..1111964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS05420 (YB51_5335) - 1100565..1101365 (+) 801 WP_002935234.1 helix-turn-helix domain-containing protein -
  YB51_RS05425 (YB51_5340) - 1101638..1102894 (+) 1257 WP_002936184.1 ISL3-like element ISSsu6 family transposase -
  YB51_RS05430 (YB51_5345) mutY 1103451..1104611 (-) 1161 WP_013730386.1 A/G-specific adenine glycosylase -
  YB51_RS05435 (YB51_5350) - 1104846..1105238 (-) 393 WP_029694144.1 PaaI family thioesterase -
  YB51_RS05440 (YB51_5355) rcrQ 1105222..1106964 (-) 1743 WP_002935237.1 ABC transporter ATP-binding protein Regulator
  YB51_RS05445 (YB51_5360) - 1106951..1108687 (-) 1737 WP_002935238.1 ABC transporter ATP-binding protein -
  YB51_RS05450 (YB51_5365) pta 1108689..1109663 (-) 975 WP_002935239.1 phosphate acetyltransferase -
  YB51_RS05455 (YB51_5370) - 1109681..1110574 (-) 894 WP_002935240.1 RluA family pseudouridine synthase -
  YB51_RS05460 (YB51_5375) - 1110574..1111392 (-) 819 WP_002935241.1 NAD kinase -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64528.65 Da        Isoelectric Point: 5.0101

>NTDB_id=52023 YB51_RS05440 WP_002935237.1 1105222..1106964(-) (rcrQ) [Streptococcus suis YB51]
MKQSSFKELVRLVLGQPFQMYLMLVGTLVQVLLTVYLPILIGQAVDAVLIADGQVLLGIIGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRHSVGDLVARFSSDSEQLTNGLLMVFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRKQTQARGKQSQLLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGQFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFDNVSFSYSPERSLIEHLDIDVEAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGVPI
RQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=52023 YB51_RS05440 WP_002935237.1 1105222..1106964(-) (rcrQ) [Streptococcus suis YB51]
ATGAAACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTAGGCCAACCCTTTCAAATGTACTTGATGTTGGTGGGAAC
TTTAGTGCAGGTGCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTTGATGCAGTATTGATAGCGGATGGTC
AGGTCTTGCTAGGGATAATTGGCAAAATGGTGATGGTTATCCTGCTTAATACGCTGGTGCAATGGTATCTCCCGCTAGTA
ACCAATCGCTTGGTTTATGGAATGGTGGCTGACTTGCGTGAACAGGTTTATGTTAAGCTGCACCAGATGCCCCTATCTTA
TCTTGATCGTCATTCAGTTGGTGATTTAGTAGCTCGTTTTTCAAGTGATAGTGAGCAATTAACCAACGGACTCTTAATGG
TTTTCAATCAATTTTTCATAGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTGACTCCAGTTTCTCTGCTTGTTGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGAAA
ACAAACACAGGCACGTGGGAAGCAATCTCAGCTACTTGAGGAATCGATCAGTCAATTGACCTTGGTTCAATCTTTCAATG
CCCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGCACGCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGGCAGTTTACAGTGGGTTCACTGACAACTTTTCTCAATTATGCTAGTCAGTACAGCAAGCCCTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTTTAGATAGCATTGAC
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGACAATGTGTCTTTCTCATATAGCCC
TGAACGTTCTCTGATAGAACATTTGGACATTGATGTCGAAGCTGGACAAAAGGTAGCCATTGTTGGACCTACTGGTGCCG
GTAAATCAACCATGATTAACCTGCTTATGCGCTTCTACGATGTGACGGCTGGTCAGATTGTTTTAGATGGGGTTCCGATT
AGACAGTACAGTCGTGAGGATCTTCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCGCAAGGGTATGATACAGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAAGGGCAACGTCAGCTC
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAAGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGCTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.501

100

0.39

Multiple sequence alignment