Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KMW38_RS01890 Genome accession   NZ_CP080518
Coordinates   406421..407755 (+) Length   444 a.a.
NCBI ID   WP_017148566.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YY322     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401421..412755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMW38_RS01870 (KMW38_01870) - 402258..402824 (-) 567 WP_003084491.1 hypothetical protein -
  KMW38_RS01875 (KMW38_01875) rsmD 402827..403423 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KMW38_RS01880 (KMW38_01880) - 403423..404910 (-) 1488 WP_003102862.1 pitrilysin family protein -
  KMW38_RS01885 (KMW38_01885) - 404903..406300 (-) 1398 WP_003084498.1 pitrilysin family protein -
  KMW38_RS01890 (KMW38_01890) pilA 406421..407755 (+) 1335 WP_017148566.1 signal recognition particle-docking protein FtsY Machinery gene
  KMW38_RS01895 (KMW38_01895) ftsE 407752..408423 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  KMW38_RS01900 (KMW38_01900) ftsX 408423..409430 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  KMW38_RS01905 (KMW38_01905) rpoH 409544..410398 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  KMW38_RS01910 (KMW38_01910) - 410463..411068 (+) 606 WP_003084511.1 hypothetical protein -
  KMW38_RS01915 (KMW38_01915) mtgA 411073..411804 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  KMW38_RS01920 (KMW38_01920) - 411841..412218 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  KMW38_RS01925 (KMW38_01925) thiS 412321..412521 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 47193.57 Da        Isoelectric Point: 4.6728

>NTDB_id=520206 KMW38_RS01890 WP_017148566.1 406421..407755(+) (pilA) [Pseudomonas aeruginosa strain YY322]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMASL
FLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYV
ILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARG
IDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGG
VIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=520206 KMW38_RS01890 WP_017148566.1 406421..407755(+) (pilA) [Pseudomonas aeruginosa strain YY322]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCACCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGA
CCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTG
TTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGA
GGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGG
CGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTG
ATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAA
GAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCA
TCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGC
ATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCG
GGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCA
ACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGG
GTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTAC
CTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(154-219)

SRP54-type protein, GTPase domain (SRP54)

(239-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.357

95.946

0.464