Detailed information NTG0520195

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K1T67_RS26200
• Genome accession: NZ_CP080511
• Coordinates: 5643520..5644524 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DJ06
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5638520..5649524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K1T67_RS26185 (K1T67_26180)	-	5639003..5640010 (+)	1008	WP_003098486.1	TolB family protein	-
K1T67_RS26190 (K1T67_26185)	mutS	5640136..5642703 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
K1T67_RS26195 (K1T67_26190)	fdxA	5642770..5643093 (+)	324	WP_003119354.1	ferredoxin FdxA	-
K1T67_RS26200 (K1T67_26195)	rpoS	5643520..5644524 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
K1T67_RS26205 (K1T67_26200)	-	5644629..5645522 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
K1T67_RS26210 (K1T67_26205)	-	5645568..5646203 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K1T67_RS26215 (K1T67_26210)	surE	5646236..5646985 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
K1T67_RS26220 (K1T67_26215)	truD	5646973..5648040 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
K1T67_RS26225 (K1T67_26220)	ispF	5648037..5648510 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K1T67_RS26230 (K1T67_26225)	fghA	5648581..5649432 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=520195 K1T67_RS26200 WP_003113871.1 5643520..5644524(-) (rpoS) [Pseudomonas aeruginosa strain DJ06]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=520195 K1T67_RS26200 WP_003113871.1 5643520..5644524(-) (rpoS) [Pseudomonas aeruginosa strain DJ06]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653