Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   K1T67_RS23810 Genome accession   NZ_CP080511
Coordinates   5127201..5127530 (-) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DJ06     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5122201..5132530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T67_RS23795 (K1T67_23790) uvrB 5123588..5125600 (-) 2013 WP_017149200.1 excinuclease ABC subunit UvrB Machinery gene
  K1T67_RS23800 (K1T67_23795) - 5125788..5126984 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  K1T67_RS23810 (K1T67_23805) comEA/comE1 5127201..5127530 (-) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  K1T67_RS23815 (K1T67_23810) - 5127721..5129718 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  K1T67_RS23820 (K1T67_23815) - 5129731..5130756 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  K1T67_RS23825 (K1T67_23820) - 5130857..5131801 (-) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=520190 K1T67_RS23810 WP_023109812.1 5127201..5127530(-) (comEA/comE1) [Pseudomonas aeruginosa strain DJ06]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=520190 K1T67_RS23810 WP_023109812.1 5127201..5127530(-) (comEA/comE1) [Pseudomonas aeruginosa strain DJ06]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385