Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   K1T67_RS22860 Genome accession   NZ_CP080511
Coordinates   4922721..4923077 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain DJ06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4917721..4928077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T67_RS22835 (K1T67_22830) - 4918087..4918719 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  K1T67_RS22840 (K1T67_22835) - 4918784..4919680 (-) 897 WP_023109838.1 radical SAM protein -
  K1T67_RS22845 (K1T67_22840) - 4919847..4920485 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  K1T67_RS22850 (K1T67_22845) - 4920571..4921704 (+) 1134 WP_023109837.1 aminotransferase class V-fold PLP-dependent enzyme -
  K1T67_RS22855 (K1T67_22850) - 4921930..4922706 (-) 777 WP_003091117.1 TatD family hydrolase -
  K1T67_RS22860 (K1T67_22855) pilZ 4922721..4923077 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  K1T67_RS22865 (K1T67_22860) - 4923111..4924097 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  K1T67_RS22870 (K1T67_22865) tmk 4924090..4924722 (-) 633 WP_003122486.1 dTMP kinase -
  K1T67_RS22875 (K1T67_22870) mltG 4924751..4925800 (-) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  K1T67_RS22880 (K1T67_22875) pabC 4925806..4926621 (-) 816 WP_003110198.1 aminodeoxychorismate lyase -
  K1T67_RS22885 (K1T67_22880) fabF 4926621..4927865 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=520182 K1T67_RS22860 WP_003091119.1 4922721..4923077(-) (pilZ) [Pseudomonas aeruginosa strain DJ06]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=520182 K1T67_RS22860 WP_003091119.1 4922721..4923077(-) (pilZ) [Pseudomonas aeruginosa strain DJ06]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACTGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449