Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K1T67_RS09760 Genome accession   NZ_CP080511
Coordinates   2098921..2100363 (+) Length   480 a.a.
NCBI ID   WP_023110379.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DJ06     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2093921..2105363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T67_RS09740 (K1T67_09740) - 2094589..2096160 (-) 1572 WP_023110380.1 DUF4129 domain-containing protein -
  K1T67_RS09745 (K1T67_09745) - 2096147..2097127 (-) 981 WP_003112783.1 stage II sporulation protein M -
  K1T67_RS09750 (K1T67_09750) - 2097124..2097921 (-) 798 WP_003123273.1 RDD family protein -
  K1T67_RS09755 (K1T67_09755) - 2097959..2098696 (-) 738 WP_003101171.1 hypothetical protein -
  K1T67_RS09760 (K1T67_09760) sbcB 2098921..2100363 (+) 1443 WP_023110379.1 exodeoxyribonuclease I Machinery gene
  K1T67_RS09765 (K1T67_09765) mvaT 2100448..2100822 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  K1T67_RS09770 (K1T67_09770) purU 2101082..2101933 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  K1T67_RS09775 (K1T67_09775) - 2101983..2102195 (+) 213 WP_003101176.1 hypothetical protein -
  K1T67_RS09780 (K1T67_09780) - 2102170..2103171 (-) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  K1T67_RS09785 (K1T67_09785) - 2103168..2103929 (-) 762 WP_023110378.1 DUF2334 domain-containing protein -
  K1T67_RS09790 (K1T67_09790) - 2103922..2105037 (-) 1116 WP_003110035.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55477.76 Da        Isoelectric Point: 5.5542

>NTDB_id=520155 K1T67_RS09760 WP_023110379.1 2098921..2100363(+) (sbcB) [Pseudomonas aeruginosa strain DJ06]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGVQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=520155 K1T67_RS09760 WP_023110379.1 2098921..2100363(+) (sbcB) [Pseudomonas aeruginosa strain DJ06]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCGTCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGTTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438