Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   K1T67_RS07935 Genome accession   NZ_CP080511
Coordinates   1725577..1726938 (+) Length   453 a.a.
NCBI ID   WP_019372180.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DJ06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1720577..1731938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T67_RS07900 (K1T67_07900) - 1720673..1721449 (+) 777 WP_023084835.1 ferredoxin--NADP reductase -
  K1T67_RS07905 (K1T67_07905) mscL 1721555..1721968 (-) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  K1T67_RS07910 (K1T67_07910) - 1722011..1722499 (+) 489 WP_170835787.1 hypothetical protein -
  K1T67_RS07915 (K1T67_07915) katB 1722496..1724037 (+) 1542 WP_033877188.1 catalase KatB -
  K1T67_RS07920 (K1T67_07920) - 1724091..1724642 (+) 552 WP_033937825.1 ankyrin repeat domain-containing protein -
  K1T67_RS07925 (K1T67_07925) - 1724717..1724971 (+) 255 WP_003104887.1 YdcH family protein -
  K1T67_RS07930 (K1T67_07930) - 1725033..1725467 (-) 435 WP_003104889.1 CopD family protein -
  K1T67_RS07935 (K1T67_07935) radA/sms 1725577..1726938 (+) 1362 WP_019372180.1 DNA repair protein RadA Machinery gene
  K1T67_RS07940 (K1T67_07940) mapZ 1726945..1727322 (-) 378 WP_003094864.1 cyclic di-GMP-binding protein MapZ -
  K1T67_RS07945 (K1T67_07945) - 1727525..1728031 (+) 507 WP_003094862.1 DUF3015 domain-containing protein -
  K1T67_RS07950 (K1T67_07950) - 1728369..1730435 (+) 2067 WP_003094859.1 carbon starvation CstA family protein -
  K1T67_RS07955 (K1T67_07955) - 1730484..1730687 (+) 204 WP_003094856.1 YbdD/YjiX family protein -
  K1T67_RS07960 (K1T67_07960) yjiA 1730747..1731751 (+) 1005 WP_179118835.1 GTPase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48438.86 Da        Isoelectric Point: 6.8357

>NTDB_id=520142 K1T67_RS07935 WP_019372180.1 1725577..1726938(+) (radA/sms) [Pseudomonas aeruginosa strain DJ06]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAVPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=520142 K1T67_RS07935 WP_019372180.1 1725577..1726938(+) (radA/sms) [Pseudomonas aeruginosa strain DJ06]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGTGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACGCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.483
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466