Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K1T67_RS00965 Genome accession   NZ_CP080511
Coordinates   200560..201933 (-) Length   457 a.a.
NCBI ID   WP_023127782.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DJ06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195560..206933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T67_RS00930 (K1T67_00930) thiS 195794..195994 (-) 201 WP_003084514.1 sulfur carrier protein ThiS -
  K1T67_RS00935 (K1T67_00935) - 196097..196474 (-) 378 WP_003084513.1 DUF423 domain-containing protein -
  K1T67_RS00940 (K1T67_00940) mtgA 196511..197242 (+) 732 WP_003084512.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  K1T67_RS00945 (K1T67_00945) - 197247..197852 (-) 606 WP_003084511.1 hypothetical protein -
  K1T67_RS00950 (K1T67_00950) rpoH 197917..198771 (-) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  K1T67_RS00955 (K1T67_00955) ftsX 198885..199892 (-) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  K1T67_RS00960 (K1T67_00960) ftsE 199892..200563 (-) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  K1T67_RS00965 (K1T67_00965) pilA 200560..201933 (-) 1374 WP_023127782.1 signal recognition particle-docking protein FtsY Machinery gene
  K1T67_RS00970 (K1T67_00970) - 202054..203451 (+) 1398 WP_073663945.1 pitrilysin family protein -
  K1T67_RS00975 (K1T67_00975) - 203444..204928 (+) 1485 WP_096236060.1 pitrilysin family protein -
  K1T67_RS00980 (K1T67_00980) rsmD 204928..205524 (+) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K1T67_RS00985 (K1T67_00985) - 205527..206093 (+) 567 WP_003084491.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48618.05 Da        Isoelectric Point: 4.5033

>NTDB_id=520113 K1T67_RS00965 WP_023127782.1 200560..201933(-) (pilA) [Pseudomonas aeruginosa strain DJ06]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLS
KTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVE
QPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSAS
VIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTG
LALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=520113 K1T67_RS00965 WP_023127782.1 200560..201933(-) (pilA) [Pseudomonas aeruginosa strain DJ06]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTG
CGCCGCTGGCCGCCGCGCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCC
AAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGA
CATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGG
CGCGCAAGGAACTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAG
CAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCAC
CATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCG
CCGTAGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCG
GTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATAC
CAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCC
TGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGC
CTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCG
CTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGC
GGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(167-232)

SRP54-type protein, GTPase domain (SRP54)

(252-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.697

96.061

0.449