Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   K0V03_RS17980 Genome accession   NZ_CP080508
Coordinates   3373294..3374430 (+) Length   378 a.a.
NCBI ID   WP_085186221.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3368294..3379430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS17960 (K0V03_17960) uxaA 3368744..3370237 (+) 1494 WP_085186227.1 UxaA family hydrolase -
  K0V03_RS17965 (K0V03_17965) yjnA 3370276..3371040 (-) 765 WP_085186225.1 sulfite exporter TauE/SafE family protein -
  K0V03_RS17970 (K0V03_17970) bstD 3371265..3371729 (-) 465 WP_014479541.1 DinB family protein -
  K0V03_RS17975 (K0V03_17975) yjoB 3371878..3373149 (+) 1272 WP_085186223.1 ATPase YjoB -
  K0V03_RS17980 (K0V03_17980) rapC 3373294..3374430 (+) 1137 WP_085186221.1 response regulator aspartate phosphatase RapA Regulator
  K0V03_RS17985 (K0V03_17985) phrA 3374420..3374554 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  K0V03_RS17990 (K0V03_17990) yjpA 3374585..3374842 (-) 258 WP_003232731.1 YciI family protein -
  K0V03_RS17995 (K0V03_17995) xlyB 3374963..3375916 (+) 954 WP_015252290.1 N-acetylmuramoyl-L-alanine amidase -
  K0V03_RS18000 (K0V03_18000) yjqA 3375956..3376333 (-) 378 WP_014479546.1 PH domain-containing protein -
  K0V03_RS18005 (K0V03_18005) pghB 3376438..3377040 (+) 603 WP_043857327.1 poly-gamma-glutamate hydrolase family protein -
  K0V03_RS18010 (K0V03_18010) xpdC 3377117..3377953 (+) 837 WP_003245071.1 manganese catalase family protein -
  K0V03_RS18015 (K0V03_18015) xkdA 3377997..3378593 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  K0V03_RS18020 (K0V03_18020) xre 3378756..3379097 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45012.21 Da        Isoelectric Point: 4.7218

>NTDB_id=520076 K0V03_RS17980 WP_085186221.1 3373294..3374430(+) (rapC) [Bacillus subtilis strain HD15]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=520076 K0V03_RS17980 WP_085186221.1 3373294..3374430(+) (rapC) [Bacillus subtilis strain HD15]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTTATGCTGGATTACATTAAGCCTTTAGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.953

100

0.421