Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   K0V03_RS15300 Genome accession   NZ_CP080508
Coordinates   2879413..2880129 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis strain HD15     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874413..2885129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS15275 (K0V03_15275) - 2875302..2875594 (-) 293 Protein_2980 spore gernimation protein -
  K0V03_RS22465 - 2875643..2875723 (-) 81 Protein_2981 spore germination protein -
  K0V03_RS15285 (K0V03_15285) - 2875850..2876035 (-) 186 Protein_2982 spore germination protein -
  K0V03_RS15290 (K0V03_15290) treP 2876224..2877636 (+) 1413 WP_085187096.1 PTS system trehalose-specific EIIBC component -
  K0V03_RS15295 (K0V03_15295) treC 2877707..2879392 (+) 1686 WP_085187099.1 alpha,alpha-phosphotrehalase -
  K0V03_RS15300 (K0V03_15300) treR 2879413..2880129 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  K0V03_RS15305 (K0V03_15305) hypO 2880269..2880934 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=520051 K0V03_RS15300 WP_003233679.1 2879413..2880129(+) (treR) [Bacillus subtilis strain HD15]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=520051 K0V03_RS15300 WP_003233679.1 2879413..2880129(+) (treR) [Bacillus subtilis strain HD15]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACTTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416