Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   K0V03_RS14825 Genome accession   NZ_CP080508
Coordinates   2783103..2784233 (+) Length   376 a.a.
NCBI ID   WP_085187021.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2778103..2789233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS14805 (K0V03_14805) yeeF 2778197..2780206 (-) 2010 WP_085187012.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  K0V03_RS14810 (K0V03_14810) - 2780373..2780711 (+) 339 WP_021481280.1 hypothetical protein -
  K0V03_RS14815 (K0V03_14815) - 2780724..2781644 (+) 921 WP_085187015.1 DUF5655 domain-containing protein -
  K0V03_RS14820 (K0V03_14820) - 2781801..2782961 (+) 1161 WP_085187018.1 lysozyme inhibitor LprI family protein -
  K0V03_RS14825 (K0V03_14825) rapC 2783103..2784233 (+) 1131 WP_085187021.1 response regulator aspartate phosphatase RapH Regulator
  K0V03_RS14830 (K0V03_14830) phrH 2784223..2784396 (+) 174 WP_029317430.1 phosphatase RapH inhibitor PhrH -
  K0V03_RS14835 (K0V03_14835) yeeI 2784556..2785275 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K0V03_RS14840 (K0V03_14840) - 2785409..2785810 (+) 402 WP_032677447.1 hypothetical protein -
  K0V03_RS14845 (K0V03_14845) yezE 2785925..2786509 (+) 585 WP_003233859.1 TetR/AcrR family transcriptional regulator -
  K0V03_RS14850 (K0V03_14850) yesE 2786588..2787031 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  K0V03_RS14855 (K0V03_14855) yesF 2787028..2787896 (+) 869 Protein_2894 NAD-dependent epimerase/dehydratase family protein -
  K0V03_RS14860 (K0V03_14860) cotJA 2788023..2788271 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  K0V03_RS14865 (K0V03_14865) cotJB 2788255..2788518 (+) 264 WP_003219491.1 spore coat protein CotJB -
  K0V03_RS14870 (K0V03_14870) cotJC 2788533..2789102 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43991.27 Da        Isoelectric Point: 5.7170

>NTDB_id=520050 K0V03_RS14825 WP_085187021.1 2783103..2784233(+) (rapC) [Bacillus subtilis strain HD15]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=520050 K0V03_RS14825 WP_085187021.1 2783103..2784233(+) (rapC) [Bacillus subtilis strain HD15]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402