Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   K0V03_RS13155 Genome accession   NZ_CP080508
Coordinates   2488056..2488490 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain HD15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2483056..2493490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS13125 (K0V03_13125) ydaD 2483704..2484564 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  K0V03_RS13130 (K0V03_13130) lyxE 2484580..2485083 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  K0V03_RS13135 (K0V03_13135) ydaF 2485170..2485721 (+) 552 WP_015715257.1 GNAT family N-acetyltransferase -
  K0V03_RS13140 (K0V03_13140) ydaG 2485799..2486221 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  K0V03_RS13145 (K0V03_13145) amj 2486727..2487536 (+) 810 WP_015715258.1 lipid II flippase Amj -
  K0V03_RS13150 (K0V03_13150) ydzA 2487581..2487871 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  K0V03_RS13155 (K0V03_13155) lrpC 2488056..2488490 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  K0V03_RS13160 (K0V03_13160) topB 2488555..2490738 (+) 2184 WP_064671959.1 DNA topoisomerase III -
  K0V03_RS13165 (K0V03_13165) ephJ 2490941..2492029 (+) 1089 WP_064671960.1 hypothetical protein -
  K0V03_RS13170 (K0V03_13170) epsK 2492010..2492861 (+) 852 WP_021481723.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=520047 K0V03_RS13155 WP_003246585.1 2488056..2488490(+) (lrpC) [Bacillus subtilis strain HD15]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=520047 K0V03_RS13155 WP_003246585.1 2488056..2488490(+) (lrpC) [Bacillus subtilis strain HD15]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1