Detailed information NTG0520036

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: K0V03_RS12395
• Genome accession: NZ_CP080508
• Coordinates: 2314786..2315907 (+)
• Length: 373 a.a.
• NCBI ID: WP_003234740.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain HD15
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2309786..2320907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0V03_RS12370 (K0V03_12370)	ycdA	2309794..2310858 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
K0V03_RS12375 (K0V03_12375)	-	2310881..2311012 (-)	132	WP_003246334.1	hypothetical protein	-
K0V03_RS12380 (K0V03_12380)	ycdB	2311186..2312604 (+)	1419	WP_085186706.1	YcdB/YcdC domain-containing protein	-
K0V03_RS12385 (K0V03_12385)	ycdC	2312791..2314152 (+)	1362	WP_085186854.1	YcdB/YcdC domain-containing protein	-
K0V03_RS12390 (K0V03_12390)	cwlK	2314160..2314663 (-)	504	WP_021481861.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
K0V03_RS12395 (K0V03_12395)	rapF	2314786..2315907 (+)	1122	WP_003234740.1	response regulator aspartate phosphatase RapJ	Regulator
K0V03_RS12400 (K0V03_12400)	ycdF	2316015..2316791 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
K0V03_RS12405 (K0V03_12405)	ycdG	2316816..2318501 (+)	1686	WP_085186708.1	alpha-glucosidase	-
K0V03_RS12410 (K0V03_12410)	znuA	2318689..2319648 (+)	960	WP_085186710.1	metal ABC transporter substrate-binding protein	-
K0V03_RS12415 (K0V03_12415)	znuC	2319703..2320398 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44427.31 Da
• Isoelectric Point: 4.8344

>NTDB_id=520036 K0V03_RS12395 WP_003234740.1 2314786..2315907(+) (rapF) [Bacillus subtilis strain HD15]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGNGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=520036 K0V03_RS12395 WP_003234740.1 2314786..2315907(+) (rapF) [Bacillus subtilis strain HD15]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATATTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATTAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAAGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAACGGTGACCTGAACGTGCTAACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCAGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405