Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   K0V03_RS11650 Genome accession   NZ_CP080508
Coordinates   2167429..2168559 (+) Length   376 a.a.
NCBI ID   WP_213410237.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2162429..2173559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS11620 (K0V03_11620) - 2163384..2163683 (+) 300 WP_088272484.1 hypothetical protein -
  K0V03_RS11625 (K0V03_11625) - 2163680..2163850 (+) 171 WP_106611105.1 XkdX family protein -
  K0V03_RS11630 (K0V03_11630) - 2163904..2164326 (+) 423 WP_046663946.1 holin family protein -
  K0V03_RS11635 (K0V03_11635) - 2164370..2165149 (+) 780 WP_213410233.1 N-acetylmuramoyl-L-alanine amidase -
  K0V03_RS11640 (K0V03_11640) - 2165178..2165594 (-) 417 WP_019712650.1 immunity 70 family protein -
  K0V03_RS11645 (K0V03_11645) - 2165606..2167225 (-) 1620 WP_213410235.1 ribonuclease YeeF family protein -
  K0V03_RS11650 (K0V03_11650) rapC 2167429..2168559 (+) 1131 WP_213410237.1 Rap family tetratricopeptide repeat protein Regulator
  K0V03_RS11655 (K0V03_11655) - 2168549..2168719 (+) 171 WP_170948337.1 hypothetical protein -
  K0V03_RS11660 (K0V03_11660) - 2168974..2169126 (-) 153 WP_220158502.1 hypothetical protein -
  K0V03_RS11665 (K0V03_11665) rpsI 2169304..2169369 (+) 66 Protein_2285 30S ribosomal protein S9 -
  K0V03_RS11670 (K0V03_11670) ybaJ 2169833..2170600 (+) 768 WP_085187965.1 class I SAM-dependent methyltransferase -
  K0V03_RS11675 (K0V03_11675) ybaK 2170786..2171229 (+) 444 WP_085187961.1 YbaK family protein -
  K0V03_RS11680 (K0V03_11680) cwlD 2171289..2172002 (+) 714 WP_085187958.1 N-acetylmuramoyl-L-alanine amidase CwlD -
  K0V03_RS11685 (K0V03_11685) salA 2172098..2173156 (+) 1059 WP_003235124.1 iron-sulfur carrier protein/transcriptional regulator SalA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44361.10 Da        Isoelectric Point: 6.2922

>NTDB_id=520033 K0V03_RS11650 WP_213410237.1 2167429..2168559(+) (rapC) [Bacillus subtilis strain HD15]
MNPVLPSSKVGVKINEWYKMIRQFSVPDAEILKAEVTREIEHMEEDQDLLIYYQLMCFRHQLMLDYLEPENKYGDRPTID
ELLEKIEKPQKKLTGLLKYYSLFFRGMHEFDQKEYVEAINYYRKAEKELYYVTDEIERAEFHFKVAEAYYIMKQTHVSMH
HILQALDVYDNQALYKVRKIQSLFVIAGNYDDFKCHDRAVPHLKNALQTAEEIENKRMMIIANLNIGHSYDRAGNYIEAA
SYFKQALSLIDGKESVLFTKVYFGLCCALFKSGHILDGVPVLKKGIEYLEKNPNELYSQLFTFLDALYVQGINETRIRKI
LDYLESKKLYAYIEECVKCVAVAYEKANDNLKASRYYKEVLETQTKILRGDCLYDY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=520033 K0V03_RS11650 WP_213410237.1 2167429..2168559(+) (rapC) [Bacillus subtilis strain HD15]
GTGAATCCGGTTTTGCCATCGTCAAAAGTTGGTGTAAAGATAAATGAATGGTATAAGATGATTCGTCAATTCAGTGTCCC
GGATGCGGAAATTTTAAAAGCTGAAGTGACACGGGAGATTGAACACATGGAAGAGGATCAAGATTTGCTGATATATTATC
AACTAATGTGTTTTCGACATCAGCTCATGCTTGATTATTTAGAGCCCGAAAATAAGTATGGTGATCGTCCGACAATAGAT
GAGCTTCTCGAAAAAATTGAGAAGCCACAGAAAAAACTCACAGGTTTATTGAAATATTATTCCTTGTTTTTCCGCGGAAT
GCATGAATTTGATCAAAAAGAATATGTGGAAGCCATAAACTATTACCGTAAAGCAGAAAAAGAGTTGTATTATGTCACTG
ATGAGATAGAGAGAGCAGAGTTTCATTTTAAAGTAGCGGAAGCATACTATATTATGAAACAAACTCACGTTTCAATGCAT
CATATTTTGCAAGCGCTGGATGTGTATGATAATCAGGCTCTTTATAAGGTCCGGAAAATACAAAGTTTATTTGTTATTGC
AGGAAATTATGACGATTTTAAATGCCATGACAGAGCTGTCCCTCACTTGAAAAATGCTCTTCAAACTGCAGAAGAAATAG
AAAATAAACGTATGATGATCATTGCTAACTTAAATATTGGTCATAGCTATGATAGGGCAGGAAATTACATAGAAGCAGCA
TCTTATTTTAAACAAGCTCTTTCATTAATTGATGGTAAAGAAAGTGTTTTGTTCACAAAAGTTTACTTCGGATTGTGTTG
CGCCCTGTTCAAATCTGGTCATATACTGGATGGAGTACCTGTGTTGAAAAAAGGCATAGAATATCTAGAAAAGAACCCAA
ATGAGTTATACAGTCAATTATTTACTTTCTTAGATGCTTTGTATGTTCAAGGCATCAACGAAACAAGGATTCGGAAGATT
CTAGATTATTTGGAGTCAAAAAAACTCTATGCTTACATCGAAGAATGCGTGAAATGTGTGGCAGTTGCGTATGAGAAAGC
AAACGACAATTTAAAAGCTTCAAGGTACTACAAAGAAGTATTAGAAACGCAAACTAAAATCTTGAGAGGAGATTGTCTTT
ATGACTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(222-249)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

43.617

100

0.436
  rapF Bacillus subtilis subsp. subtilis str. 168

41.161

100

0.415