Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   K0V03_RS10840 Genome accession   NZ_CP080508
Coordinates   2037339..2037569 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain HD15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2032339..2042569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS10810 (K0V03_10810) ridA 2032503..2032880 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  K0V03_RS10815 (K0V03_10815) spoVG 2033075..2033368 (+) 294 WP_003218346.1 septation regulator SpoVG -
  K0V03_RS10820 (K0V03_10820) glmU 2033561..2034931 (+) 1371 WP_076458812.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  K0V03_RS10825 (K0V03_10825) prsS 2034954..2035907 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  K0V03_RS10830 (K0V03_10830) rplYB 2035992..2036606 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  K0V03_RS10835 (K0V03_10835) pth 2036713..2037279 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  K0V03_RS10840 (K0V03_10840) subA/fin 2037339..2037569 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  K0V03_RS10845 (K0V03_10845) mfd 2037639..2041172 (+) 3534 WP_220158531.1 transcription-repair coupling factor -
  K0V03_RS10850 (K0V03_10850) spoVT 2041308..2041844 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=520029 K0V03_RS10840 WP_003243417.1 2037339..2037569(+) (subA/fin) [Bacillus subtilis strain HD15]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=520029 K0V03_RS10840 WP_003243417.1 2037339..2037569(+) (subA/fin) [Bacillus subtilis strain HD15]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1