Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   YB51_RS02480 Genome accession   NC_022516
Coordinates   463452..464228 (+) Length   258 a.a.
NCBI ID   WP_013730191.1    Uniprot ID   -
Organism   Streptococcus suis YB51     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 458452..469228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS10765 - 461575..461778 (-) 204 Protein_435 transposase -
  YB51_RS02475 (YB51_2300) rlmD 462062..463414 (-) 1353 WP_004194110.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  YB51_RS02480 (YB51_2305) recX 463452..464228 (+) 777 WP_013730191.1 recombination regulator RecX Regulator
  YB51_RS02485 (YB51_2310) - 464304..464837 (+) 534 WP_004194106.1 DUF402 domain-containing protein -
  YB51_RS10200 (YB51_2315) - 464895..465008 (+) 114 Protein_439 DUF960 family protein -
  YB51_RS02490 (YB51_2320) - 465038..466294 (-) 1257 WP_013730428.1 ISL3 family transposase -
  YB51_RS02495 - 466419..466635 (+) 217 Protein_441 DUF960 family protein -
  YB51_RS02500 (YB51_2325) - 466735..467466 (+) 732 WP_013730193.1 GntR family transcriptional regulator -
  YB51_RS02505 (YB51_2330) - 467608..468318 (-) 711 WP_004194099.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30429.95 Da        Isoelectric Point: 9.2585

>NTDB_id=52001 YB51_RS02480 WP_013730191.1 463452..464228(+) (recX) [Streptococcus suis YB51]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQTVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=52001 YB51_RS02480 WP_013730191.1 463452..464228(+) (recX) [Streptococcus suis YB51]
ATGAGAATTACAAAAATTGAAAAAAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAATAATATTGTCAAGATAGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCCGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACCGCTGATTGATAAAAGACTGGCTGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCCCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAGGGGTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTACGAATTGAAGCAAAGGTTGATACAGGCTTTA
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGACTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.206

100

0.364

Multiple sequence alignment