Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K0V03_RS01975 Genome accession   NZ_CP080508
Coordinates   337837..338247 (-) Length   136 a.a.
NCBI ID   WP_085186522.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 332837..343247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS01945 (K0V03_01945) - 332924..333064 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  K0V03_RS01950 (K0V03_01950) yqeF 333370..334101 (-) 732 WP_085186514.1 SGNH/GDSL hydrolase family protein -
  K0V03_RS01955 (K0V03_01955) cwlH 334353..335105 (-) 753 WP_085186516.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  K0V03_RS01960 (K0V03_01960) yqeD 335292..335918 (+) 627 WP_085186518.1 TVP38/TMEM64 family protein -
  K0V03_RS01965 (K0V03_01965) gnd 335938..336831 (-) 894 WP_041850033.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  K0V03_RS01970 (K0V03_01970) yqeB 337083..337805 (+) 723 WP_085186520.1 hypothetical protein -
  K0V03_RS01975 (K0V03_01975) nucA/comI 337837..338247 (-) 411 WP_085186522.1 sporulation-specific Dnase NucB Machinery gene
  K0V03_RS01980 (K0V03_01980) - 338443..338793 (+) 351 Protein_393 sigma-70 family RNA polymerase sigma factor -
  K0V03_RS01985 (K0V03_01985) spoIVCA 338821..340281 (-) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  K0V03_RS22140 - 340239..340417 (-) 179 Protein_395 hypothetical protein -
  K0V03_RS01990 (K0V03_01990) arsC 340772..341191 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  K0V03_RS01995 (K0V03_01995) acr3 341203..342243 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  K0V03_RS02000 (K0V03_02000) arsK 342266..342706 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  K0V03_RS02005 (K0V03_02005) arsR 342767..343084 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14995.00 Da        Isoelectric Point: 5.1853

>NTDB_id=519976 K0V03_RS01975 WP_085186522.1 337837..338247(-) (nucA/comI) [Bacillus subtilis strain HD15]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMNSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=519976 K0V03_RS01975 WP_085186522.1 337837..338247(-) (nucA/comI) [Bacillus subtilis strain HD15]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCAATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAACAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529