Detailed information NTG0519917

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: K0819_RS09435
• Genome accession: NZ_CP080478
• Coordinates: 1937763..1938743 (+)
• Length: 326 a.a.
• NCBI ID: WP_005454798.1
• Uniprot ID: Q87Q07
• Organism: Vibrio parahaemolyticus strain Vp2015094
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1932763..1943743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0819_RS09415 (K0819_09360)	-	1933120..1934730 (+)	1611	WP_109883743.1	peptide ABC transporter substrate-binding protein	-
K0819_RS09420 (K0819_09365)	oppB	1934897..1935817 (+)	921	WP_109883741.1	oligopeptide ABC transporter permease OppB	-
K0819_RS09425 (K0819_09370)	-	1935827..1936759 (+)	933	WP_017448602.1	ABC transporter permease subunit	-
K0819_RS09430 (K0819_09375)	-	1936770..1937753 (+)	984	WP_069546762.1	ABC transporter ATP-binding protein	-
K0819_RS09435 (K0819_09380)	amiE	1937763..1938743 (+)	981	WP_005454798.1	ABC transporter ATP-binding protein	Regulator
K0819_RS09440 (K0819_09385)	-	1938753..1940549 (+)	1797	WP_109883737.1	aminopeptidase P family protein	-
K0819_RS09445 (K0819_09390)	-	1940798..1943242 (-)	2445	WP_109883735.1	collagenase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 36406.21 Da
• Isoelectric Point: 8.3113

>NTDB_id=519917 K0819_RS09435 WP_005454798.1 1937763..1938743(+) (amiE) [Vibrio parahaemolyticus strain Vp2015094]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide

• Length: 981 bp

>NTDB_id=519917 K0819_RS09435 WP_005454798.1 1937763..1938743(+) (amiE) [Vibrio parahaemolyticus strain Vp2015094]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTACCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAGTTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGAGCCTTAATCCTCAATCCGGACTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTCTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTAAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCGATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCAGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (238-305)

• ABC transporter (ABC_tran) (35-186)

3D structure

• AlphaFold DB: Q87Q07

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus thermophilus LMG 18311	40.514	95.399	0.386
amiE	Streptococcus thermophilus LMD-9	40.514	95.399	0.386
amiF	Streptococcus salivarius strain HSISS4	45.455	84.356	0.383
amiE	Streptococcus salivarius strain HSISS4	39.744	95.706	0.38
amiF	Streptococcus thermophilus LMG 18311	45.421	83.742	0.38
amiF	Streptococcus thermophilus LMD-9	45.055	83.742	0.377
oppD	Streptococcus mutans UA159	38.339	96.012	0.368