Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K0819_RS08550 Genome accession   NZ_CP080478
Coordinates   1731286..1732830 (+) Length   514 a.a.
NCBI ID   WP_025623392.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726286..1737830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS08525 (K0819_08470) - 1726588..1726908 (+) 321 WP_005454817.1 STAS domain-containing protein -
  K0819_RS08530 (K0819_08475) - 1726935..1727837 (+) 903 WP_005495092.1 OmpA family protein -
  K0819_RS08535 (K0819_08480) - 1727870..1729935 (+) 2066 Protein_1530 SLBB domain-containing protein -
  K0819_RS08540 (K0819_08485) - 1729935..1730621 (+) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  K0819_RS08545 (K0819_08490) - 1730634..1731014 (+) 381 WP_025534416.1 Hpt domain-containing protein -
  K0819_RS08550 (K0819_08495) luxO 1731286..1732830 (+) 1545 WP_025623392.1 sigma-54-dependent transcriptional regulator Regulator
  K0819_RS08555 (K0819_08500) - 1732805..1733875 (+) 1071 WP_042780134.1 glycosyltransferase family 4 protein -
  K0819_RS08560 (K0819_08505) - 1734026..1735210 (+) 1185 WP_140201913.1 glycosyltransferase -
  K0819_RS08565 (K0819_08510) - 1735221..1736393 (+) 1173 WP_140201912.1 glycosyltransferase family 4 protein -
  K0819_RS08570 (K0819_08515) - 1736386..1737816 (+) 1431 WP_180789742.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57435.29 Da        Isoelectric Point: 5.8567

>NTDB_id=519915 K0819_RS08550 WP_025623392.1 1731286..1732830(+) (luxO) [Vibrio parahaemolyticus strain Vp2015094]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSSNLNGHNAPAMQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=519915 K0819_RS08550 WP_025623392.1 1731286..1732830(+) (luxO) [Vibrio parahaemolyticus strain Vp2015094]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCAGTCATCATCGCC
ACCGCACACGGTAGTGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGTGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTAGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTACCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAGCAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCGATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.299

97.082

0.479