Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K0819_RS00515 Genome accession   NZ_CP080478
Coordinates   104804..106093 (+) Length   429 a.a.
NCBI ID   WP_272591708.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99804..111093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS00475 (K0819_00475) - 100105..100434 (-) 330 WP_015297474.1 DUF2500 domain-containing protein -
  K0819_RS00480 (K0819_00480) - 100676..101044 (+) 369 WP_005489749.1 hypothetical protein -
  K0819_RS00485 (K0819_00485) - 101107..101286 (-) 180 WP_005458791.1 hypothetical protein -
  K0819_RS00490 (K0819_00490) - 102021..102641 (+) 621 WP_005481960.1 lysoplasmalogenase -
  K0819_RS00495 (K0819_00495) - 102711..102932 (+) 222 WP_015297472.1 YecH family metal-binding protein -
  K0819_RS00500 (K0819_00500) - 103052..103635 (+) 584 Protein_86 YhgN family NAAT transporter -
  K0819_RS00505 (K0819_00505) - 103689..103955 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  K0819_RS00510 (K0819_00510) rsmD 103981..104580 (-) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K0819_RS00515 (K0819_00515) pilA 104804..106093 (+) 1290 WP_272591708.1 signal recognition particle-docking protein FtsY Machinery gene
  K0819_RS00520 (K0819_00520) ftsE 106116..106790 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  K0819_RS00525 (K0819_00525) ftsX 106780..107748 (+) 969 WP_025527377.1 permease-like cell division protein FtsX -
  K0819_RS00530 (K0819_00530) rpoH 107924..108784 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  K0819_RS00535 (K0819_00535) glpE 109276..109596 (+) 321 WP_005496409.1 thiosulfate sulfurtransferase GlpE -
  K0819_RS00540 (K0819_00540) glpG 109596..110438 (+) 843 WP_005496414.1 rhomboid family intramembrane serine protease GlpG -
  K0819_RS00545 (K0819_00545) - 110498..110908 (-) 411 WP_005460376.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 46571.10 Da        Isoelectric Point: 4.1354

>NTDB_id=519873 K0819_RS00515 WP_272591708.1 104804..106093(+) (pilA) [Vibrio parahaemolyticus strain Vp2015094]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEIAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEAEAEAEAEAEAEAEAEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFE
ELEEQLLIADVGMDTTTKIINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTT
TIGKLAKQFQSQGKKVMLAAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQ
NKANLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPI
RYIGVGEGIEDLRPFETQEFIDALFSREE

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=519873 K0819_RS00515 WP_272591708.1 104804..106093(+) (pilA) [Vibrio parahaemolyticus strain Vp2015094]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGTCCAAAGCCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGATTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGA
GCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAGCGCAGCC
TAAGCCGTACGAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTGAA
GAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATCAACAACCTGACAGAAAAAGC
CTCTCGAGGTGATCTGAAAGATGGCGAAGCTCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGTAG
AACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCACC
ACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCTGGCGATACTTTCCGAGCGGC
TGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGCAT
CGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTACAA
AACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAAAT
CATGCTGACGCTGGATGCGGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAACCG
GGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTAGTATTCCAATT
CGCTACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGCCG
TGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(145-206)

SRP54-type protein, GTPase domain (SRP54)

(226-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.051

86.014

0.422