Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   JEQ25_RS18940 Genome accession   NZ_CP066380
Coordinates   3604036..3605193 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain ID-A05     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599036..3610193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS18910 (JEQ25_18780) yvyF 3599289..3599708 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  JEQ25_RS18915 (JEQ25_18785) comFC 3599782..3600504 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  JEQ25_RS18920 (JEQ25_18790) comFB 3600468..3600764 (-) 297 WP_003227989.1 late competence protein ComFB -
  JEQ25_RS18925 (JEQ25_18795) comFA 3600824..3602215 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  JEQ25_RS18930 (JEQ25_18800) fakBA 3602321..3603166 (-) 846 WP_003244125.1 DegV family protein -
  JEQ25_RS18935 (JEQ25_18805) degU 3603264..3603953 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JEQ25_RS18940 (JEQ25_18810) degS 3604036..3605193 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  JEQ25_RS18945 (JEQ25_18815) yvyE 3605410..3606063 (+) 654 WP_003227979.1 YigZ family protein -
  JEQ25_RS18950 (JEQ25_18820) tagV 3606063..3607238 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  JEQ25_RS18955 (JEQ25_18825) tagO 3607311..3608387 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  JEQ25_RS18960 (JEQ25_18830) tuaH 3608532..3609725 (-) 1194 WP_003243252.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=519855 JEQ25_RS18940 WP_003227983.1 3604036..3605193(-) (degS) [Bacillus subtilis strain ID-A05]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=519855 JEQ25_RS18940 WP_003227983.1 3604036..3605193(-) (degS) [Bacillus subtilis strain ID-A05]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTCCGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1