Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JEQ25_RS15025 Genome accession   NZ_CP066380
Coordinates   2828316..2829062 (-) Length   248 a.a.
NCBI ID   WP_069704049.1    Uniprot ID   A0AA96ZT92
Organism   Bacillus subtilis strain ID-A05     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2823316..2834062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS15000 (JEQ25_14890) mreC 2823722..2824594 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  JEQ25_RS15005 (JEQ25_14895) mreB 2824625..2825638 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  JEQ25_RS15010 (JEQ25_14900) radC 2825730..2826425 (-) 696 WP_014480455.1 DNA repair protein RadC -
  JEQ25_RS15015 (JEQ25_14905) maf 2826462..2827031 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  JEQ25_RS15020 (JEQ25_14910) spoIIB 2827184..2828182 (-) 999 WP_046381249.1 stage II sporulation protein SpoIIB -
  JEQ25_RS15025 (JEQ25_14915) comC 2828316..2829062 (-) 747 WP_069704049.1 A24 family peptidase Machinery gene
  JEQ25_RS15030 (JEQ25_14920) folC 2829202..2830494 (-) 1293 WP_046381250.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  JEQ25_RS15035 (JEQ25_14925) valS 2830554..2833196 (-) 2643 WP_046381251.1 valine--tRNA ligase -
  JEQ25_RS15040 (JEQ25_14930) - 2833644..2833835 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26455.03 Da        Isoelectric Point: 9.7803

>NTDB_id=519842 JEQ25_RS15025 WP_069704049.1 2828316..2829062(-) (comC) [Bacillus subtilis strain ID-A05]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=519842 JEQ25_RS15025 WP_069704049.1 2828316..2829062(-) (comC) [Bacillus subtilis strain ID-A05]
ATGCTATCCATTCTTTTTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGTGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98