Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JEQ25_RS11450 Genome accession   NZ_CP066380
Coordinates   2223937..2224557 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain ID-A05     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2218937..2229557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS11410 (JEQ25_11315) ypqE 2220068..2220574 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  JEQ25_RS11415 (JEQ25_11320) ypqA 2220712..2221131 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  JEQ25_RS11420 (JEQ25_11325) yppG 2221152..2221529 (-) 378 WP_046381139.1 YppG family protein -
  JEQ25_RS11425 (JEQ25_11330) yppF 2221717..2221905 (+) 189 WP_003230690.1 YppF family protein -
  JEQ25_RS11430 (JEQ25_11335) yppE 2221944..2222315 (-) 372 WP_003246080.1 YppE family protein -
  JEQ25_RS11435 (JEQ25_11340) yppD 2222361..2222606 (-) 246 WP_004398488.1 YppD family protein -
  JEQ25_RS11440 (JEQ25_11345) sspM 2222805..2222909 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  JEQ25_RS11445 (JEQ25_11350) yppC 2222934..2223896 (-) 963 WP_046381140.1 DUF2515 domain-containing protein -
  JEQ25_RS11450 (JEQ25_11355) recU 2223937..2224557 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  JEQ25_RS11455 (JEQ25_11360) ponA 2224579..2227311 (+) 2733 WP_046381141.1 PBP1A family penicillin-binding protein -
  JEQ25_RS11460 (JEQ25_11365) ypoC 2227387..2227881 (-) 495 WP_029726783.1 YpoC family protein -
  JEQ25_RS11465 (JEQ25_11370) nth 2227878..2228537 (-) 660 WP_009967580.1 endonuclease III -
  JEQ25_RS11470 (JEQ25_11375) dnaD 2228556..2229254 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=519823 JEQ25_RS11450 WP_004399067.1 2223937..2224557(+) (recU) [Bacillus subtilis strain ID-A05]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=519823 JEQ25_RS11450 WP_004399067.1 2223937..2224557(+) (recU) [Bacillus subtilis strain ID-A05]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1