Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JEQ25_RS08235 Genome accession   NZ_CP066380
Coordinates   1532939..1533217 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain ID-A05     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527939..1538217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS08215 (JEQ25_08150) - 1529127..1530038 (+) 912 WP_046380996.1 ketopantoate reductase family protein -
  JEQ25_RS08220 (JEQ25_08155) ampS 1530072..1531304 (-) 1233 WP_003232341.1 aminopeptidase -
  JEQ25_RS08225 (JEQ25_08160) ykpC 1531413..1531547 (-) 135 WP_003238865.1 protein YkpC -
  JEQ25_RS08230 (JEQ25_08165) mreBH 1531648..1532655 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  JEQ25_RS08235 (JEQ25_08170) abrB 1532939..1533217 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  JEQ25_RS08240 (JEQ25_08175) kinC 1533407..1534693 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  JEQ25_RS08245 (JEQ25_08180) ykqA 1534709..1535536 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  JEQ25_RS08250 (JEQ25_08185) ktrC 1535599..1536264 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  JEQ25_RS08255 (JEQ25_08190) ade 1536419..1538152 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=519818 JEQ25_RS08235 WP_003244728.1 1532939..1533217(+) (abrB) [Bacillus subtilis strain ID-A05]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=519818 JEQ25_RS08235 WP_003244728.1 1532939..1533217(+) (abrB) [Bacillus subtilis strain ID-A05]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576