Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   K1T74_RS07765 Genome accession   NZ_CP080462
Coordinates   1652544..1652924 (+) Length   126 a.a.
NCBI ID   WP_220105615.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1647544..1657924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS07740 - 1648136..1648792 (+) 657 WP_000974697.1 HEAT repeat domain-containing protein -
  K1T74_RS07745 - 1648803..1649648 (+) 846 WP_001002907.1 protein-glutamate O-methyltransferase CheR -
  K1T74_RS07750 - 1649648..1650019 (+) 372 WP_000757478.1 PleD family two-component system response regulator -
  K1T74_RS07755 - 1650028..1652301 (+) 2274 WP_220106256.1 chemotaxis protein CheA -
  K1T74_RS07760 - 1652291..1652551 (+) 261 WP_001143862.1 hypothetical protein -
  K1T74_RS07765 pilL-C 1652544..1652924 (+) 381 WP_220105615.1 response regulator Machinery gene
  K1T74_RS07770 - 1652932..1654167 (+) 1236 WP_000621946.1 methyl-accepting chemotaxis protein -
  K1T74_RS07775 - 1654222..1654536 (-) 315 WP_000312389.1 multidrug efflux SMR transporter -
  K1T74_RS07780 - 1654628..1656130 (-) 1503 WP_220105616.1 cryptochrome/deoxyribodipyrimidine photo-lyase family protein -
  K1T74_RS07785 - 1656286..1657692 (-) 1407 WP_220105617.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13704.06 Da        Isoelectric Point: 9.8959

>NTDB_id=519733 K1T74_RS07765 WP_220105615.1 1652544..1652924(+) (pilL-C) [Vibrio cholerae strain ICDC-VC702]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAITSYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=519733 K1T74_RS07765 WP_220105615.1 1652544..1652924(+) (pilL-C) [Vibrio cholerae strain ICDC-VC702]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTACTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

39.2

99.206

0.389