Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JEQ16_RS16775 Genome accession   NZ_CP066377
Coordinates   3386121..3386810 (-) Length   229 a.a.
NCBI ID   WP_278071957.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3381121..3391810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS16740 (JEQ16_16650) fliW 3381212..3381643 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  JEQ16_RS16745 (JEQ16_16655) - 3381673..3382242 (-) 570 WP_003151397.1 DUF6470 family protein -
  JEQ16_RS16750 (JEQ16_16660) flgL 3382333..3383250 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  JEQ16_RS16755 (JEQ16_16665) flgK 3383262..3384779 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  JEQ16_RS16760 (JEQ16_16670) - 3384795..3385277 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JEQ16_RS16765 (JEQ16_16675) flgM 3385292..3385558 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JEQ16_RS16770 (JEQ16_16680) - 3385628..3386047 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  JEQ16_RS16775 (JEQ16_16685) comFC 3386121..3386810 (-) 690 WP_278071957.1 phosphoribosyltransferase family protein Machinery gene
  JEQ16_RS16780 (JEQ16_16690) - 3386816..3387100 (-) 285 WP_017418816.1 competence protein ComFB -
  JEQ16_RS16785 (JEQ16_16695) comFA 3387158..3388543 (-) 1386 WP_278071350.1 DEAD/DEAH box helicase Machinery gene
  JEQ16_RS16790 (JEQ16_16700) - 3388651..3389499 (-) 849 WP_146284021.1 DegV family protein -
  JEQ16_RS16795 (JEQ16_16705) degU 3389597..3390286 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JEQ16_RS16800 (JEQ16_16710) degS 3390363..3391526 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25316.01 Da        Isoelectric Point: 8.2927

>NTDB_id=519618 JEQ16_RS16775 WP_278071957.1 3386121..3386810(-) (comFC) [Bacillus velezensis strain ID-A01]
MNCLLCDSPISGSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=519618 JEQ16_RS16775 WP_278071957.1 3386121..3386810(-) (comFC) [Bacillus velezensis strain ID-A01]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAGGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603