Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JEQ16_RS13000 Genome accession   NZ_CP066377
Coordinates   2652000..2652752 (-) Length   250 a.a.
NCBI ID   WP_278071205.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2647000..2657752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS12975 (JEQ16_12910) mreC 2647436..2648299 (-) 864 WP_070082166.1 rod shape-determining protein MreC -
  JEQ16_RS12980 (JEQ16_12915) mreB 2648330..2649343 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  JEQ16_RS12985 (JEQ16_12920) radC 2649435..2650130 (-) 696 WP_007408165.1 DNA repair protein RadC -
  JEQ16_RS12990 (JEQ16_12925) - 2650162..2650731 (-) 570 WP_070082167.1 Maf family protein -
  JEQ16_RS12995 (JEQ16_12930) - 2650872..2651873 (-) 1002 WP_278071204.1 SPOR domain-containing protein -
  JEQ16_RS13000 (JEQ16_12935) comC 2652000..2652752 (-) 753 WP_278071205.1 A24 family peptidase Machinery gene
  JEQ16_RS13005 (JEQ16_12940) - 2652892..2654184 (-) 1293 WP_278071206.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  JEQ16_RS13010 (JEQ16_12945) - 2654243..2656885 (-) 2643 WP_278071207.1 valine--tRNA ligase -
  JEQ16_RS13015 (JEQ16_12950) - 2657338..2657529 (+) 192 WP_060674742.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27076.70 Da        Isoelectric Point: 9.2521

>NTDB_id=519608 JEQ16_RS13000 WP_278071205.1 2652000..2652752(-) (comC) [Bacillus velezensis strain ID-A01]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLSLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=519608 JEQ16_RS13000 WP_278071205.1 2652000..2652752(-) (comC) [Bacillus velezensis strain ID-A01]
ATGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATCTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(102-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58