Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JEQ16_RS12130 Genome accession   NZ_CP066377
Coordinates   2497053..2497820 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2492053..2502820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS12110 (JEQ16_12050) - 2492255..2493067 (-) 813 WP_071181854.1 pyruvate, water dikinase regulatory protein -
  JEQ16_RS12115 (JEQ16_12055) ccpN 2493093..2493731 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  JEQ16_RS12120 (JEQ16_12060) glyS 2493832..2495871 (-) 2040 WP_278071175.1 glycine--tRNA ligase subunit beta -
  JEQ16_RS12125 (JEQ16_12065) glyQ 2495864..2496751 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  JEQ16_RS12130 (JEQ16_12070) recO 2497053..2497820 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  JEQ16_RS12135 (JEQ16_12075) - 2497857..2498000 (-) 144 WP_007408286.1 YqzL family protein -
  JEQ16_RS12140 (JEQ16_12080) era 2498156..2499061 (-) 906 WP_007408285.1 GTPase Era -
  JEQ16_RS12145 (JEQ16_12085) - 2499042..2499452 (-) 411 WP_003152976.1 cytidine deaminase -
  JEQ16_RS12150 (JEQ16_12090) - 2499576..2499950 (-) 375 WP_038461537.1 diacylglycerol kinase family protein -
  JEQ16_RS12155 (JEQ16_12095) ybeY 2499931..2500404 (-) 474 WP_278071176.1 rRNA maturation RNase YbeY -
  JEQ16_RS12160 (JEQ16_12100) - 2500405..2502537 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=519601 JEQ16_RS12130 WP_003152982.1 2497053..2497820(-) (recO) [Bacillus velezensis strain ID-A01]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=519601 JEQ16_RS12130 WP_003152982.1 2497053..2497820(-) (recO) [Bacillus velezensis strain ID-A01]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894