Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JEQ16_RS08870 Genome accession   NZ_CP066377
Coordinates   1801168..1801602 (+) Length   144 a.a.
NCBI ID   WP_278071863.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1796168..1806602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS08865 (JEQ16_08815) - 1799668..1800879 (-) 1212 WP_146283510.1 cytochrome P450 -
  JEQ16_RS08870 (JEQ16_08820) nucA/comI 1801168..1801602 (+) 435 WP_278071863.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JEQ16_RS08875 (JEQ16_08825) - 1801662..1802417 (+) 756 WP_077722226.1 YoaK family protein -
  JEQ16_RS08880 (JEQ16_08830) - 1802451..1802813 (-) 363 WP_007410383.1 hypothetical protein -
  JEQ16_RS08885 (JEQ16_08835) - 1803006..1804334 (-) 1329 WP_146276818.1 S8 family peptidase -
  JEQ16_RS08890 (JEQ16_08840) - 1804512..1804745 (+) 234 WP_278071864.1 hypothetical protein -
  JEQ16_RS08895 (JEQ16_08845) - 1805002..1805709 (+) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  JEQ16_RS08900 (JEQ16_08850) - 1805770..1806222 (+) 453 WP_278071865.1 OsmC family protein -
  JEQ16_RS08905 (JEQ16_08855) - 1806236..1806589 (-) 354 WP_003154073.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15558.49 Da        Isoelectric Point: 7.2418

>NTDB_id=519589 JEQ16_RS08870 WP_278071863.1 1801168..1801602(+) (nucA/comI) [Bacillus velezensis strain ID-A01]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSATRAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=519589 JEQ16_RS08870 WP_278071863.1 1801168..1801602(+) (nucA/comI) [Bacillus velezensis strain ID-A01]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTACTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCAGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493