Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JEQ16_RS01765 Genome accession   NZ_CP066377
Coordinates   325347..325784 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320347..330784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS01730 - 320949..321107 (-) 159 Protein_300 molybdopterin dinucleotide binding domain-containing protein -
  JEQ16_RS01735 (JEQ16_01730) - 321222..322424 (+) 1203 WP_278071561.1 GTP-binding protein -
  JEQ16_RS01740 (JEQ16_01735) - 322489..323625 (+) 1137 WP_102421766.1 zinc-dependent alcohol dehydrogenase -
  JEQ16_RS01745 (JEQ16_01740) - 323640..324074 (+) 435 WP_021494203.1 RDD family protein -
  JEQ16_RS01750 (JEQ16_01745) - 324147..324467 (+) 321 WP_015388719.1 YckD family protein -
  JEQ16_RS01755 (JEQ16_01755) - 324678..324908 (+) 231 Protein_305 family 1 glycosylhydrolase -
  JEQ16_RS01760 (JEQ16_01760) nin/comJ 324927..325325 (-) 399 WP_077721770.1 competence protein ComJ Regulator
  JEQ16_RS01765 (JEQ16_01765) nucA/comI 325347..325784 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JEQ16_RS01770 (JEQ16_01770) hxlB 326143..326700 (-) 558 WP_025650327.1 6-phospho-3-hexuloisomerase -
  JEQ16_RS01775 (JEQ16_01775) hxlA 326697..327332 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  JEQ16_RS01780 (JEQ16_01780) - 327564..327926 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=519560 JEQ16_RS01765 WP_003156588.1 325347..325784(-) (nucA/comI) [Bacillus velezensis strain ID-A01]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=519560 JEQ16_RS01765 WP_003156588.1 325347..325784(-) (nucA/comI) [Bacillus velezensis strain ID-A01]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641