Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K0H55_RS18540 Genome accession   NZ_CP080370
Coordinates   3848062..3848502 (+) Length   146 a.a.
NCBI ID   WP_000360895.1    Uniprot ID   B7LFX5
Organism   Escherichia coli strain PK5086     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3843062..3853502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H55_RS18520 (K0H55_18520) aroP 3844060..3845433 (+) 1374 WP_001347572.1 aromatic amino acid transporter AroP -
  K0H55_RS18525 (K0H55_18525) ampE 3845476..3846330 (-) 855 WP_000172000.1 beta-lactamase regulator AmpE -
  K0H55_RS18530 (K0H55_18530) ampD 3846327..3846878 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  K0H55_RS18535 (K0H55_18535) nadC 3846966..3847859 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K0H55_RS18540 (K0H55_18540) pilA 3848062..3848502 (+) 441 WP_000360895.1 prepilin peptidase-dependent pilin Machinery gene
  K0H55_RS18545 (K0H55_18545) pilB 3848512..3849897 (+) 1386 WP_001025174.1 type II secretion system protein GspE Machinery gene
  K0H55_RS18550 (K0H55_18550) hofC 3849887..3851089 (+) 1203 WP_000157236.1 protein transport protein HofC -
  K0H55_RS18555 (K0H55_18555) guaC 3851124..3852167 (-) 1044 WP_001217338.1 GMP reductase -
  K0H55_RS18560 (K0H55_18560) - 3852323..3852367 (-) 45 WP_120795372.1 protein YacM -
  K0H55_RS18565 (K0H55_18565) coaE 3852392..3853012 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15602.71 Da        Isoelectric Point: 4.3927

>NTDB_id=519495 K0H55_RS18540 WP_000360895.1 3848062..3848502(+) (pilA) [Escherichia coli strain PK5086]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=519495 K0H55_RS18540 WP_000360895.1 3848062..3848502(+) (pilA) [Escherichia coli strain PK5086]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LFX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363