Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K0H55_RS08820 Genome accession   NZ_CP080370
Coordinates   1848737..1850164 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain PK5086     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843737..1855164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H55_RS08790 (K0H55_08790) yeeZ 1843792..1844616 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  K0H55_RS08795 (K0H55_08795) yeeY 1844662..1845591 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K0H55_RS08800 (K0H55_08800) yoeI 1845806..1845868 (+) 63 WP_010723108.1 membrane protein YoeI -
  K0H55_RS08805 (K0H55_08805) plaP 1845858..1847216 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K0H55_RS08810 (K0H55_08810) tsuA 1847395..1848453 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  K0H55_RS08815 (K0H55_08815) tsuB 1848467..1848694 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K0H55_RS08820 (K0H55_08820) sbcB 1848737..1850164 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  K0H55_RS08825 (K0H55_08825) dacD 1850373..1851539 (+) 1167 WP_000830171.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K0H55_RS08830 (K0H55_08830) sbmC 1851658..1852131 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  K0H55_RS08835 (K0H55_08835) yeeA 1852330..1853388 (+) 1059 WP_001200891.1 FUSC family protein -
  K0H55_RS08840 (K0H55_08840) tmaR 1853560..1853889 (+) 330 WP_000450409.1 DUF496 family protein -
  K0H55_RS08845 (K0H55_08845) - 1853990..1854181 (-) 192 Protein_1734 EutP/PduV family microcompartment system protein -
  K0H55_RS08850 (K0H55_08850) cobU 1854348..1854893 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=519470 K0H55_RS08820 WP_000980607.1 1848737..1850164(-) (sbcB) [Escherichia coli strain PK5086]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=519470 K0H55_RS08820 WP_000980607.1 1848737..1850164(-) (sbcB) [Escherichia coli strain PK5086]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACTTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583