Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GI364_RS22055 Genome accession   NZ_CP066339
Coordinates   4716433..4717788 (-) Length   451 a.a.
NCBI ID   WP_198854160.1    Uniprot ID   A0A7T5EZ67
Organism   Alicyclobacillus sp. SO9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4711433..4722788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI364_RS22035 (GI364_22220) ispF 4712318..4712797 (-) 480 WP_198851320.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GI364_RS22040 (GI364_22225) - 4713093..4714217 (-) 1125 WP_198851321.1 PIN/TRAM domain-containing protein -
  GI364_RS22045 (GI364_22230) pssA 4714547..4715281 (-) 735 WP_370541808.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  GI364_RS22050 (GI364_22235) disA 4715342..4716421 (-) 1080 WP_198851322.1 DNA integrity scanning diadenylate cyclase DisA -
  GI364_RS22055 (GI364_22240) radA 4716433..4717788 (-) 1356 WP_198854160.1 DNA repair protein RadA Machinery gene
  GI364_RS22060 (GI364_22245) - 4717962..4720385 (-) 2424 WP_198851323.1 ATP-dependent Clp protease ATP-binding subunit -
  GI364_RS22065 (GI364_22250) - 4720386..4721462 (-) 1077 WP_198851324.1 protein arginine kinase -
  GI364_RS22070 (GI364_22255) - 4721466..4721993 (-) 528 WP_198851325.1 UvrB/UvrC motif-containing protein -
  GI364_RS22075 (GI364_22260) - 4722164..4722652 (-) 489 WP_198851326.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48593.83 Da        Isoelectric Point: 6.5066

>NTDB_id=519379 GI364_RS22055 WP_198854160.1 4716433..4717788(-) (radA) [Alicyclobacillus sp. SO9]
MAKVKTKFLCQDCGYESVKWIGKCPGCGEWNSFVEERQATAPAPRRGLGGETSKILPIGDIPSQNEVRFSSGSSETNRVL
GGGIVPGSLVLIGGDPGIGKSTLLLQLSYKVAEQGKTVLYISGEESASQLKLRAERLGTIHPNLYVLSETDMETALLLVE
KQKPDLLIVDSIQTVYAPSITSAPGSVSQVRECTSMLLRTAKGQQIATMIVGHVTKEGNLAGPRLLEHMVDAVLYFEGER
HHTYRVLRANKNRFGSTNELAIFNMQEQGLVEVLNPSEMFLSERSEQAPGSAVVTAMEGSRPLLLEVQALIAPTSFGTPR
RMATGADYNRVSLILAVLEKRVGLNLQASDAYVNLAGGVRVDEPAIDLGIAMAIAASHRDKTLSGSDVFMGEIGLTGEVR
SITKLEGRIREAEKLGFERCIVPARSLSGTDFGQIQVIGVKTLREALDLAL

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=519379 GI364_RS22055 WP_198854160.1 4716433..4717788(-) (radA) [Alicyclobacillus sp. SO9]
ATGGCAAAGGTCAAGACAAAGTTCCTCTGCCAGGACTGTGGTTACGAATCTGTAAAGTGGATTGGCAAATGCCCGGGTTG
TGGAGAGTGGAACTCGTTTGTTGAAGAGCGGCAGGCAACGGCCCCGGCTCCGCGAAGGGGTCTCGGCGGAGAAACCTCGA
AAATACTTCCCATTGGGGACATTCCGTCCCAAAACGAAGTTCGTTTCTCAAGCGGTTCAAGTGAGACCAATCGGGTGCTG
GGCGGAGGCATTGTCCCTGGTTCTCTCGTCCTCATCGGCGGCGATCCCGGCATTGGCAAGTCAACGTTGCTGCTCCAACT
TTCTTACAAGGTTGCAGAGCAGGGAAAGACGGTCTTGTATATTTCAGGCGAGGAGTCTGCAAGCCAGTTAAAACTCCGAG
CAGAGCGGCTTGGCACAATCCATCCGAACTTGTATGTTCTCTCAGAAACGGACATGGAGACCGCTTTGTTATTGGTCGAA
AAGCAAAAACCGGACCTGCTTATTGTGGATTCCATCCAAACCGTCTATGCACCAAGTATTACATCGGCTCCCGGCAGCGT
GTCACAGGTACGGGAGTGCACCAGCATGCTGCTGCGCACCGCGAAAGGACAGCAGATTGCTACAATGATTGTAGGACATG
TTACAAAGGAAGGGAATCTGGCAGGTCCCAGGCTCCTGGAACACATGGTGGATGCAGTTTTGTATTTTGAAGGCGAACGC
CATCATACTTATAGAGTACTGCGGGCGAATAAAAATAGGTTTGGTTCCACAAATGAGTTGGCGATATTTAATATGCAGGA
ACAGGGGCTTGTCGAAGTGTTGAATCCTTCGGAAATGTTCCTGTCTGAGCGATCGGAGCAAGCCCCTGGTTCGGCTGTTG
TGACCGCCATGGAAGGTTCGCGACCGCTGCTGTTGGAAGTGCAAGCACTGATTGCGCCCACTAGCTTTGGTACACCAAGG
CGCATGGCTACGGGAGCTGATTATAACCGAGTCAGCTTGATTTTGGCCGTGTTGGAAAAACGCGTTGGCCTTAATCTGCA
GGCTTCTGATGCTTACGTCAATTTGGCGGGCGGCGTGCGAGTGGATGAGCCTGCCATTGACCTGGGAATTGCCATGGCCA
TTGCAGCCAGTCATCGAGATAAAACACTTTCTGGTTCTGATGTTTTCATGGGCGAAATAGGATTGACAGGGGAAGTGCGT
TCAATTACCAAACTTGAAGGGCGAATCCGGGAAGCTGAAAAACTGGGTTTTGAGAGGTGTATTGTTCCCGCAAGGAGTCT
TAGCGGGACGGATTTTGGCCAGATTCAGGTTATCGGGGTCAAAACCCTTCGAGAAGCACTGGATTTGGCACTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5EZ67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

61.623

100

0.623
  radA Streptococcus mitis NCTC 12261

59.465

99.557

0.592
  radA Streptococcus mitis SK321

59.465

99.557

0.592
  radA Streptococcus pneumoniae TIGR4

59.243

99.557

0.59
  radA Streptococcus pneumoniae D39

59.243

99.557

0.59
  radA Streptococcus pneumoniae Rx1

59.243

99.557

0.59
  radA Streptococcus pneumoniae R6

59.243

99.557

0.59