Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JFU10_RS17865 Genome accession   NZ_CP066337
Coordinates   3558467..3558751 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain Mr12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3553467..3563751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS17845 - 3554712..3555620 (+) 909 WP_198863673.1 ketopantoate reductase family protein -
  JFU10_RS17850 - 3555651..3556883 (-) 1233 WP_070081754.1 aminopeptidase -
  JFU10_RS17855 - 3556984..3557118 (-) 135 WP_003154559.1 protein YkpC -
  JFU10_RS17860 mreBH 3557190..3558197 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  JFU10_RS17865 abrB 3558467..3558751 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JFU10_RS17870 - 3558924..3560228 (+) 1305 WP_014304932.1 ATP-binding protein -
  JFU10_RS17875 - 3560230..3561057 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  JFU10_RS17880 ktrC 3561098..3561763 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  JFU10_RS17885 ade 3561912..3563645 (+) 1734 WP_101562975.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=519358 JFU10_RS17865 WP_024085249.1 3558467..3558751(+) (abrB) [Bacillus velezensis strain Mr12]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=519358 JFU10_RS17865 WP_024085249.1 3558467..3558751(+) (abrB) [Bacillus velezensis strain Mr12]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543