Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   JFU10_RS17655 Genome accession   NZ_CP066337
Coordinates   3522106..3522570 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain Mr12     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517106..3527570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS17635 - 3517586..3519406 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  JFU10_RS17640 - 3519382..3520601 (-) 1220 Protein_3454 aminotransferase A -
  JFU10_RS17645 - 3520802..3520963 (-) 162 WP_007409608.1 hypothetical protein -
  JFU10_RS17650 cheV 3521152..3522063 (+) 912 WP_003154623.1 chemotaxis protein CheV -
  JFU10_RS17655 kre 3522106..3522570 (-) 465 WP_003154622.1 YkyB family protein Regulator
  JFU10_RS17660 - 3522693..3523985 (-) 1293 WP_071391909.1 MFS transporter -
  JFU10_RS17665 - 3524061..3524555 (-) 495 WP_166706324.1 L,D-transpeptidase family protein -
  JFU10_RS17670 - 3524630..3525493 (-) 864 WP_071391907.1 metallophosphoesterase -
  JFU10_RS17675 fadH 3525637..3526401 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  JFU10_RS17680 - 3526512..3527060 (+) 549 WP_071391906.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=519356 JFU10_RS17655 WP_003154622.1 3522106..3522570(-) (kre) [Bacillus velezensis strain Mr12]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=519356 JFU10_RS17655 WP_003154622.1 3522106..3522570(-) (kre) [Bacillus velezensis strain Mr12]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929