Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   JFU10_RS16360 Genome accession   NZ_CP066337
Coordinates   3278815..3279768 (+) Length   317 a.a.
NCBI ID   WP_070081621.1    Uniprot ID   -
Organism   Bacillus velezensis strain Mr12     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3273815..3284768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS16335 argF 3275633..3276604 (+) 972 WP_071391999.1 ornithine carbamoyltransferase -
  JFU10_RS16340 - 3276680..3276859 (+) 180 WP_003155070.1 YjzC family protein -
  JFU10_RS16345 - 3276896..3277081 (-) 186 WP_198863636.1 YjzD family protein -
  JFU10_RS16350 - 3277342..3278076 (+) 735 WP_070081619.1 hypothetical protein -
  JFU10_RS16355 - 3278159..3278725 (+) 567 WP_198863637.1 hypothetical protein -
  JFU10_RS16360 med 3278815..3279768 (+) 954 WP_070081621.1 BMP family ABC transporter substrate-binding protein Regulator
  JFU10_RS16365 comZ 3279781..3279972 (+) 192 WP_198863638.1 ComZ family protein Regulator
  JFU10_RS16370 - 3280002..3280220 (-) 219 WP_003155059.1 hypothetical protein -
  JFU10_RS16375 - 3280388..3281326 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  JFU10_RS16380 fabF 3281349..3282587 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  JFU10_RS16385 - 3282671..3283456 (+) 786 WP_198863639.1 DUF2268 domain-containing protein -
  JFU10_RS16390 - 3283630..3284616 (+) 987 WP_029325950.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35315.92 Da        Isoelectric Point: 4.5594

>NTDB_id=519348 JFU10_RS16360 WP_070081621.1 3278815..3279768(+) (med) [Bacillus velezensis strain Mr12]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=519348 JFU10_RS16360 WP_070081621.1 3278815..3279768(+) (med) [Bacillus velezensis strain Mr12]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTAGGTGTCATCGCCTCCTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACGGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785