Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JFU10_RS10750 Genome accession   NZ_CP066337
Coordinates   2223739..2224029 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain Mr12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2218739..2229029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS10710 darA 2218756..2219085 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  JFU10_RS10715 - 2219098..2219538 (+) 441 WP_029974647.1 YaaR family protein -
  JFU10_RS10720 holB 2219550..2220539 (+) 990 WP_128574753.1 DNA polymerase III subunit delta' -
  JFU10_RS10725 ricT 2220542..2221369 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  JFU10_RS10730 yabA 2221384..2221743 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  JFU10_RS10735 - 2221804..2222547 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JFU10_RS10740 - 2222534..2222833 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  JFU10_RS10745 rsmI 2222808..2223689 (+) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JFU10_RS10750 abrB 2223739..2224029 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  JFU10_RS10755 metG 2224512..2226503 (+) 1992 WP_166705762.1 methionine--tRNA ligase -
  JFU10_RS10760 - 2226579..2227346 (+) 768 WP_032868379.1 TatD family hydrolase -
  JFU10_RS10765 - 2227481..2228806 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=519330 JFU10_RS10750 WP_169510469.1 2223739..2224029(-) (abrB) [Bacillus velezensis strain Mr12]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=519330 JFU10_RS10750 WP_169510469.1 2223739..2224029(-) (abrB) [Bacillus velezensis strain Mr12]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGTAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979