Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JFU10_RS04270 Genome accession   NZ_CP066337
Coordinates   947057..947809 (-) Length   250 a.a.
NCBI ID   WP_071391543.1    Uniprot ID   -
Organism   Bacillus velezensis strain Mr12     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 942057..952809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS04245 mreC 942493..943356 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  JFU10_RS04250 mreB 943387..944400 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  JFU10_RS04255 radC 944492..945187 (-) 696 WP_007408165.1 RadC family protein -
  JFU10_RS04260 - 945219..945788 (-) 570 WP_070082167.1 Maf family protein -
  JFU10_RS04265 - 945929..946930 (-) 1002 WP_071391544.1 SPOR domain-containing protein -
  JFU10_RS04270 comC 947057..947809 (-) 753 WP_071391543.1 prepilin peptidase Machinery gene
  JFU10_RS04275 - 947949..949241 (-) 1293 WP_071391542.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  JFU10_RS04280 - 949300..951942 (-) 2643 WP_071391541.1 valine--tRNA ligase -
  JFU10_RS04285 - 952395..952586 (+) 192 WP_060674742.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27150.83 Da        Isoelectric Point: 9.2521

>NTDB_id=519308 JFU10_RS04270 WP_071391543.1 947057..947809(-) (comC) [Bacillus velezensis strain Mr12]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPIVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=519308 JFU10_RS04270 WP_071391543.1 947057..947809(-) (comC) [Bacillus velezensis strain Mr12]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCATCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGTCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584