Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JFU10_RS03470 Genome accession   NZ_CP066337
Coordinates   798401..799168 (-) Length   255 a.a.
NCBI ID   WP_198863807.1    Uniprot ID   -
Organism   Bacillus velezensis strain Mr12     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 793401..804168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFU10_RS03450 - 793603..794415 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  JFU10_RS03455 ccpN 794441..795079 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  JFU10_RS03460 glyS 795180..797219 (-) 2040 WP_198863806.1 glycine--tRNA ligase subunit beta -
  JFU10_RS03465 glyQ 797212..798099 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  JFU10_RS03470 recO 798401..799168 (-) 768 WP_198863807.1 DNA repair protein RecO Machinery gene
  JFU10_RS03475 - 799205..799348 (-) 144 WP_007408286.1 YqzL family protein -
  JFU10_RS03480 era 799504..800409 (-) 906 WP_007408285.1 GTPase Era -
  JFU10_RS03485 - 800390..800800 (-) 411 WP_003152976.1 cytidine deaminase -
  JFU10_RS03490 - 800924..801298 (-) 375 WP_198863947.1 diacylglycerol kinase family protein -
  JFU10_RS03495 ybeY 801279..801752 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  JFU10_RS03500 - 801753..803885 (-) 2133 WP_198863808.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29237.83 Da        Isoelectric Point: 8.3099

>NTDB_id=519301 JFU10_RS03470 WP_198863807.1 798401..799168(-) (recO) [Bacillus velezensis strain Mr12]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPSPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=519301 JFU10_RS03470 WP_198863807.1 798401..799168(-) (recO) [Bacillus velezensis strain Mr12]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGTGTCATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAGCCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89