Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GKQ51_RS15910 Genome accession   NZ_CP066310
Coordinates   3379938..3380987 (-) Length   349 a.a.
NCBI ID   WP_089168875.1    Uniprot ID   A0AAP9YBG4
Organism   Azotobacter chroococcum strain HR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3374938..3385987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKQ51_RS15895 (GKQ51_15895) - 3376592..3377998 (+) 1407 WP_039802695.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  GKQ51_RS15900 (GKQ51_15900) - 3378146..3379225 (+) 1080 WP_039802693.1 LOG family protein -
  GKQ51_RS15905 (GKQ51_15905) recX 3379459..3379929 (-) 471 WP_198866456.1 recombination regulator RecX -
  GKQ51_RS15910 (GKQ51_15910) recA 3379938..3380987 (-) 1050 WP_089168875.1 recombinase RecA Machinery gene
  GKQ51_RS15915 (GKQ51_15915) - 3381074..3381607 (-) 534 WP_198866457.1 CinA family protein -
  GKQ51_RS15920 (GKQ51_15920) mutS 3381679..3384246 (+) 2568 WP_198866458.1 DNA mismatch repair protein MutS -
  GKQ51_RS15925 (GKQ51_15925) fdxA 3384382..3384705 (+) 324 WP_039802689.1 ferredoxin FdxA -
  GKQ51_RS15930 (GKQ51_15930) rpoS 3384792..3385793 (-) 1002 WP_039802688.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37174.49 Da        Isoelectric Point: 5.3078

>NTDB_id=519253 GKQ51_RS15910 WP_089168875.1 3379938..3380987(-) (recA) [Azotobacter chroococcum strain HR1]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSTIA
EAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGNKIGQGKANAAKFLEDNREVAAAIEK
SIRDQLLAAPASARPAAVADEPADADLDY

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=519253 GKQ51_RS15910 WP_089168875.1 3379938..3380987(-) (recA) [Azotobacter chroococcum strain HR1]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCGGCTTTGGGCCAGATTGAAAAGCAGTTCGGCAAGGGCGCTGTCATGCG
CATGGGCGACCATGAGCGCCAGGCGATTCCGGCCATTTCCACCGGCTCCCTGGGGCTGGACATCGCACTCGGCATCGGCG
GCCTGCCCAAGGGGCGGATCGTCGAGATCTACGGCCCCGAATCCTCCGGCAAGACCACCCTGACCCTGTCGACCATCGCC
GAGGCGCAGAAGCAGGGGGCCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGGATTATGCCGCCAAGCTTGG
GGTGAACGTCGACGACCTGCTGGTCTCCCAGCCGGACACCGGCGAGCAGGCTCTGGAGATCACCGACATGCTGGTGCGCT
CCAATGCGGTGGACGTGATTATCGTCGACTCGGTGGCGGCACTGGTGCCCAAGGCGGAGATCGAGGGCGAGATGGGCGAT
GCGCACGTCGGCCTGCAGGCGCGTCTGATGTCCCAGGCGTTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGTCT
GGTGATTTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGTGGCAACGCCC
TGAAGTTCTACGCCTCCGTGCGTCTGGACATCCGCCGTACCGGCGCGGTCAAGGAGGGTGACGAGGTGGTGGGCAGCGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTTCGCCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGTAT
CTACCGCAACGGCGAGATCATCGATCTTGGCGTGCAGCTCGGTCTGCTGGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAATGCGGCCAAGTTCCTCGAGGACAATCGGGAGGTCGCCGCGGCCATCGAGAAG
AGCATCCGCGACCAGCTGCTCGCCGCGCCTGCCAGTGCCCGGCCGGCGGCCGTGGCCGACGAACCGGCCGACGCGGACCT
CGACTACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.049

99.427

0.885
  recA Acinetobacter baylyi ADP1

73.487

99.427

0.731
  recA Acinetobacter baumannii D1279779

75.684

94.269

0.713
  recA Vibrio cholerae strain A1552

74.924

93.696

0.702
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.924

93.696

0.702
  recA Glaesserella parasuis strain SC1401

70.809

99.14

0.702
  recA Ralstonia pseudosolanacearum GMI1000

73.585

91.117

0.67
  recA Neisseria gonorrhoeae MS11

70.679

92.837

0.656
  recA Neisseria gonorrhoeae MS11

70.679

92.837

0.656
  recA Neisseria gonorrhoeae strain FA1090

70.679

92.837

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

93.696

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.905

96.275

0.596
  recA Helicobacter pylori strain NCTC11637

63.303

93.696

0.593
  recA Helicobacter pylori 26695

62.691

93.696

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

92.264

0.582
  recA Streptococcus mutans UA159

60.55

93.696

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

91.977

0.559
  recA Streptococcus mitis SK321

59.816

93.41

0.559
  recA Streptococcus mitis NCTC 12261

59.202

93.41

0.553
  recA Streptococcus pneumoniae TIGR4

58.896

93.41

0.55
  recA Streptococcus pneumoniae Rx1

58.896

93.41

0.55
  recA Streptococcus pneumoniae D39

58.896

93.41

0.55
  recA Streptococcus pneumoniae R6

58.896

93.41

0.55
  recA Streptococcus pyogenes NZ131

59.077

93.123

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.098

93.983

0.527
  recA Lactococcus lactis subsp. cremoris KW2

56.656

92.55

0.524