Detailed information NTG0519241

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GKQ51_RS04785
• Genome accession: NZ_CP066310
• Coordinates: 1024468..1025829 (-)
• Length: 453 a.a.
• NCBI ID: WP_089167323.1
• Uniprot ID: -
• Organism: Azotobacter chroococcum strain HR1
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1022927..1024291	1024468..1025829	flank	177

Gene organization within MGE regions

Location: 1022927..1025829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKQ51_RS04780 (GKQ51_04780)	-	1022927..1024240 (-)	1314	WP_082045559.1	IS4 family transposase	-
GKQ51_RS04785 (GKQ51_04785)	radA	1024468..1025829 (-)	1362	WP_089167323.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48697.24 Da
• Isoelectric Point: 6.8321

>NTDB_id=519241 GKQ51_RS04785 WP_089167323.1 1024468..1025829(-) (radA) [Azotobacter chroococcum strain HR1]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETLLEGAATPNGRGGWAGQQANVRTLAEVSVEELPRFSTASKELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNVAERFPALYVTGEESQQQVAMRARRLDLPQDKLKVMTETCIEAIIATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAVFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDTSHMGNP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALLAAVISSLRNRPLPHDLLVFGEIGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPRGNTPKEAPEGLAVIPVTRLEQALDALFE

Nucleotide

• Length: 1362 bp

>NTDB_id=519241 GKQ51_RS04785 WP_089167323.1 1024468..1025829(-) (radA) [Azotobacter chroococcum strain HR1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGGCGAGTG
CGGCGCCTGGAACACCCTGGTGGAAACCCTGCTGGAGGGCGCGGCGACGCCGAACGGTCGCGGCGGCTGGGCCGGCCAAC
AGGCCAACGTCAGGACCCTGGCGGAAGTCAGCGTCGAGGAGCTGCCGCGCTTCTCCACCGCCTCCAAGGAACTCGACCGG
GTGCTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCTGGGATCGGCAAGTCGACCATCCTCCT
GCAGACCCTGTGCAACGTCGCCGAGCGCTTCCCGGCGCTCTACGTCACCGGCGAGGAGTCCCAGCAGCAGGTCGCGATGC
GCGCCCGCCGCCTCGACCTGCCGCAGGACAAGCTCAAGGTGATGACCGAGACCTGCATCGAGGCGATCATCGCCACCGCC
CGCCTGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAGCTGCAGTCGGCCCCCGGCGG
CGTCGCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGCTTCGCCAAGCAGAGCGGCACGGCGGTGTTCCTGGTCGGCC
ACGTGACCAAGGAGGGCGCGCTGGCCGGCCCGCGGGTGCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAGGGCGAA
TCCGACGGTCGCCTGCGCCTGTTGCGGGCGGTGAAGAACCGCTTCGGCGCGATCAACGAGCTGGGCGTGTTCGGCATGAC
CGACAAGGGCCTGAAGGAGGTGTCCAACCCCTCGGCGATCTTCCTCACCCGCGCCCAGGAGGAAGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGACACCAGCCATATGGGCAACCCG
CGCCGCGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGGCGGCATCCCCAC
CTACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGCTGCTCGCCG
CGGTGATCTCCAGCCTGCGCAACCGGCCCCTGCCCCACGATCTCCTGGTGTTCGGCGAGATCGGCCTGTCCGGCGAGATC
CGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAAGCCGCCAAGCATGGTTTCAAGCGCGCCATCGTGCCCCGCGGCAA
CACGCCCAAGGAGGCGCCGGAGGGGCTGGCGGTGATTCCGGTGACGCGCCTGGAGCAGGCGCTGGATGCGCTGTTCGAGT
GA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (73-219)

• Subunit ChlI of Mg-chelatase (ChlI) (363-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.238	100	0.483
radA	Streptococcus mitis SK321	46.608	100	0.47
radA	Streptococcus mitis NCTC 12261	46.389	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.476	100	0.466
radA	Streptococcus pneumoniae R6	46.476	100	0.466
radA	Streptococcus pneumoniae Rx1	46.476	100	0.466
radA	Streptococcus pneumoniae D39	46.476	100	0.466