Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JD108_RS13125 Genome accession   NZ_CP066308
Coordinates   2576641..2578365 (-) Length   574 a.a.
NCBI ID   WP_198826514.1    Uniprot ID   A0A7T5EHZ8
Organism   Brevibacillus composti strain FJAT-54423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2571641..2583365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD108_RS13110 (JD108_13110) spo0A 2572205..2572993 (-) 789 WP_198826512.1 sporulation transcription factor Spo0A -
  JD108_RS13115 (JD108_13115) ltrA 2573280..2574692 (-) 1413 WP_198826346.1 group II intron reverse transcriptase/maturase -
  JD108_RS13120 (JD108_13120) spoIVB 2575135..2576469 (-) 1335 WP_198826513.1 SpoIVB peptidase -
  JD108_RS13125 (JD108_13125) recN 2576641..2578365 (-) 1725 WP_198826514.1 DNA repair protein RecN Machinery gene
  JD108_RS13130 (JD108_13130) ahrC 2578382..2578831 (-) 450 WP_198826515.1 transcriptional regulator AhrC/ArgR -
  JD108_RS13135 (JD108_13135) - 2578836..2579693 (-) 858 WP_198826516.1 NAD(+)/NADH kinase -
  JD108_RS13140 (JD108_13140) - 2579826..2580638 (-) 813 WP_198826517.1 TlyA family RNA methyltransferase -
  JD108_RS13145 (JD108_13145) dxs 2580635..2582521 (-) 1887 WP_198826518.1 1-deoxy-D-xylulose-5-phosphate synthase -
  JD108_RS13150 (JD108_13150) - 2582818..2583153 (-) 336 WP_198826519.1 Na+/H+ antiporter NhaC family protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64774.61 Da        Isoelectric Point: 4.9267

>NTDB_id=519219 JD108_RS13125 WP_198826514.1 2576641..2578365(-) (recN) [Brevibacillus composti strain FJAT-54423]
MLLELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGRASSDLVRYGESRAEVEGLFELPPGHPAFSVC
ESFGVQAEQDGTLLVRRDISSQGKSIIRINGQLVTLAILRELGPWLVTVHGQHDTHMLMQTDKHIHWLDSYGESRLGSAK
QEYAQLYASYSKTRQDLERMSRNERELVQRIDLLQYQLNEIEAASLTPGEDEKLSLQRKKWINIEKIFSGIQDAYRSLHG
DQRGLDWLGHAMSELERISSYEEQLLPVLENVQSAYYQIEDAVHQLRQLSERLDFEPEQLQEVERRLDLIQSLKRKYGKN
VDEILEYAATIQDELDEMHHYDDRLQQLEKRLAELAADLAVEAAELSMIRKSCAEQLAAEIEQQLRELHMERARFAIDVR
QVPDENGVDIEGTTWRVDANGIDTVEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVQTMIFDEVDTGVSG
RAAQAIAEKLARVAQQRQVLCITHLPQVASLADAHYLIQKEMSEHETMTVVHRLTDEERVIELARMLGGAQVTAKTEEHA
REMILLGRQRKAVP

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=519219 JD108_RS13125 WP_198826514.1 2576641..2578365(-) (recN) [Brevibacillus composti strain FJAT-54423]
ATGCTACTGGAGCTTTCCATCCGCAATTTTGCGATTATCAAATCCGTCACGATCTCCTTTCAAAAAGGATTGAACATCTT
GACGGGAGAAACGGGAGCAGGGAAATCGATCATCATCGATGCGCTGGGGCTCCTCCTGGGAGGCCGGGCTTCCTCGGACC
TGGTCCGCTATGGGGAGTCGCGGGCCGAAGTGGAGGGGCTGTTTGAGCTGCCGCCCGGCCATCCGGCTTTTTCCGTCTGT
GAGAGCTTCGGCGTACAGGCGGAGCAGGACGGGACGCTGCTCGTTCGGCGCGACATATCCAGTCAGGGAAAAAGCATCAT
CCGCATCAACGGCCAGCTGGTCACTCTGGCCATCCTGAGGGAATTGGGGCCGTGGCTGGTCACGGTGCACGGGCAGCATG
ACACGCATATGCTGATGCAAACCGACAAGCATATCCACTGGCTCGACTCGTACGGAGAGAGCCGCTTGGGTTCGGCCAAG
CAAGAGTACGCCCAGTTGTACGCCAGCTACTCCAAGACCCGGCAGGATTTGGAGCGGATGTCTCGCAATGAGCGCGAGTT
GGTCCAGCGGATCGATCTCTTGCAATATCAGCTGAATGAGATCGAAGCGGCTTCCCTGACGCCGGGCGAGGACGAAAAGC
TCAGCCTGCAGCGCAAAAAGTGGATCAACATCGAGAAAATTTTCAGCGGCATCCAGGACGCCTACCGCTCGCTTCACGGG
GACCAGCGCGGCCTGGATTGGCTGGGACATGCCATGAGCGAGCTGGAGCGGATCTCTTCTTATGAGGAGCAACTGCTGCC
GGTGCTGGAGAATGTACAGAGCGCCTACTACCAGATCGAGGATGCCGTGCATCAGCTGCGGCAGCTGTCCGAGCGGCTGG
ATTTTGAGCCGGAACAATTGCAGGAAGTGGAGCGCAGGCTGGATCTGATTCAGAGCTTAAAACGGAAATACGGCAAAAAT
GTGGACGAGATCCTCGAATATGCGGCGACCATCCAGGATGAGCTGGATGAGATGCACCATTATGACGATCGTTTGCAGCA
GCTGGAAAAAAGGCTGGCAGAACTGGCTGCAGATCTGGCGGTGGAAGCCGCCGAGCTGTCGATGATTCGCAAGAGCTGTG
CGGAACAGCTGGCGGCGGAGATCGAGCAGCAGCTGCGGGAGCTTCATATGGAAAGAGCCCGCTTTGCCATCGACGTGCGG
CAAGTGCCGGATGAGAACGGGGTCGACATCGAAGGAACCACCTGGCGAGTGGACGCCAACGGCATCGATACCGTCGAGTT
CCTGATCTCGCCGAATCCGGGCGAGCCGCTGAGACCGCTGGCCAAGATTGCCTCGGGCGGCGAACTGTCCCGCGTCATGC
TGGCGATCAAAACGATCCTGGCAGGTACGGACCAGGTCCAGACGATGATCTTCGATGAAGTGGACACCGGAGTGAGCGGC
CGAGCCGCCCAGGCCATCGCGGAGAAGCTGGCCAGAGTGGCCCAGCAGCGCCAGGTCCTGTGCATCACCCACTTGCCGCA
AGTGGCTTCCCTGGCTGATGCCCACTACCTCATCCAAAAAGAGATGAGCGAGCATGAGACGATGACCGTGGTCCACCGCT
TGACGGACGAAGAGAGGGTCATCGAGCTGGCCCGCATGCTGGGCGGGGCACAGGTCACCGCCAAAACCGAAGAGCACGCG
CGGGAAATGATCCTGCTGGGACGGCAGCGAAAAGCCGTTCCCTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5EHZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.735

98.78

0.491