Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JD108_RS01180 Genome accession   NZ_CP066308
Coordinates   210791..212158 (+) Length   455 a.a.
NCBI ID   WP_198828219.1    Uniprot ID   A0A7T5EL87
Organism   Brevibacillus composti strain FJAT-54423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 205791..217158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD108_RS01160 (JD108_01160) - 206050..206514 (+) 465 WP_198828215.1 CtsR family transcriptional regulator -
  JD108_RS01165 (JD108_01165) - 206543..207061 (+) 519 WP_198828216.1 UvrB/UvrC motif-containing protein -
  JD108_RS01170 (JD108_01170) - 207080..208141 (+) 1062 WP_198828217.1 protein arginine kinase -
  JD108_RS01175 (JD108_01175) - 208223..210676 (+) 2454 WP_198828218.1 ATP-dependent Clp protease ATP-binding subunit -
  JD108_RS01180 (JD108_01180) radA 210791..212158 (+) 1368 WP_198828219.1 DNA repair protein RadA Machinery gene
  JD108_RS01185 (JD108_01185) disA 212168..213244 (+) 1077 WP_198828220.1 DNA integrity scanning diadenylate cyclase DisA -
  JD108_RS01190 (JD108_01190) pssA 213364..214092 (+) 729 WP_198828221.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JD108_RS01195 (JD108_01195) - 214186..214581 (-) 396 WP_198828222.1 DUF1573 domain-containing protein -
  JD108_RS01200 (JD108_01200) - 214870..215961 (+) 1092 WP_198828223.1 PIN/TRAM domain-containing protein -
  JD108_RS01205 (JD108_01205) ispD 216035..216733 (+) 699 WP_198828224.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49219.64 Da        Isoelectric Point: 6.9051

>NTDB_id=519206 JD108_RS01180 WP_198828219.1 210791..212158(+) (radA) [Brevibacillus composti strain FJAT-54423]
MSKYKTKYACQECGYESPKWMGKCPGCNSWNTMVEEVAVKAAARHEGLHGGQRQTAIPLTEVASEEEPRMDTTIHELNRV
LGGGLVPGSMVLVGGDPGIGKSTLLLQTSFALAHQGAKVLYVSGEESAKQIKLRADRLGMSTPPMYVLSENDLDAIEQHI
AQIDPHVLIIDSIQTVFHPAVQSAAGSVAQVRETTSHLMRIAKGKGIATFIVGHVTKEGAIAGPRMLEHMVDAVLYFEGE
RHNTFRILRAVKNRFGSTNEIGIFEMKEKGLEEVGNPSEIFLAERPVGVAGSTVVASMEGTRPVLVELQALVAPTSFATP
RRMATGVDHQRVAMIMAVLEKRVGLMLQNQDAYVNVAGGVRLDEPAVDLAVAVSIASSFRDHATNPHDVVIGEVGLTGEV
RGVSRIEQRIREAHKLGFKRVIIPSKNIRGLDVPPDIEVIGVSNISEALREVLRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=519206 JD108_RS01180 WP_198828219.1 210791..212158(+) (radA) [Brevibacillus composti strain FJAT-54423]
ATGTCAAAGTATAAAACGAAATACGCGTGTCAAGAATGTGGCTATGAATCACCCAAATGGATGGGCAAATGCCCCGGCTG
CAACAGCTGGAACACGATGGTGGAGGAGGTCGCCGTCAAGGCTGCCGCACGCCATGAAGGGTTGCACGGAGGACAGCGGC
AAACCGCCATTCCTCTGACAGAGGTGGCAAGTGAAGAAGAGCCGCGCATGGATACGACGATTCACGAATTAAATCGCGTC
CTCGGCGGAGGGCTGGTGCCCGGCTCCATGGTACTCGTCGGCGGAGACCCGGGGATTGGCAAGTCTACCCTGCTCTTGCA
GACATCCTTTGCGCTCGCGCATCAGGGCGCCAAAGTCCTGTATGTATCCGGGGAGGAGTCTGCCAAGCAGATCAAACTGC
GAGCCGACCGGCTTGGCATGAGCACACCGCCGATGTACGTCTTATCCGAAAATGATCTCGATGCGATCGAACAGCATATA
GCCCAGATTGACCCCCATGTGCTGATCATAGACTCCATTCAAACGGTCTTTCACCCCGCCGTCCAATCTGCTGCGGGGAG
TGTGGCCCAGGTGCGGGAGACGACTTCCCACCTGATGAGGATCGCAAAAGGAAAGGGCATCGCCACCTTTATCGTGGGCC
ACGTGACCAAAGAAGGGGCGATTGCAGGTCCGCGCATGCTGGAGCACATGGTGGATGCGGTCCTCTATTTTGAGGGGGAG
CGGCACAATACCTTTCGCATCCTGCGTGCCGTCAAGAACCGCTTTGGATCGACAAACGAAATCGGTATCTTTGAAATGAA
AGAAAAAGGGCTGGAGGAAGTAGGCAATCCCTCGGAGATCTTCCTGGCGGAACGCCCTGTCGGGGTAGCCGGCTCCACGG
TCGTCGCCAGCATGGAGGGAACCAGGCCCGTTTTGGTCGAACTGCAGGCATTGGTGGCGCCAACCAGCTTTGCTACGCCG
CGCCGCATGGCCACCGGAGTGGATCACCAGCGGGTCGCGATGATTATGGCTGTCCTGGAAAAGCGCGTCGGTCTCATGCT
GCAAAATCAGGATGCCTATGTGAACGTAGCAGGCGGCGTTCGTCTGGATGAGCCTGCGGTAGACCTGGCAGTGGCTGTCA
GCATCGCCAGCAGCTTTCGCGACCATGCCACCAATCCCCATGATGTCGTCATCGGCGAGGTAGGCTTGACGGGAGAGGTC
AGAGGAGTGTCCCGCATCGAGCAGAGAATCCGCGAAGCCCACAAGCTGGGATTCAAACGGGTTATTATCCCGTCAAAAAA
TATACGCGGTCTGGATGTGCCGCCCGACATCGAGGTTATTGGCGTCAGCAACATTTCGGAAGCGCTCCGCGAAGTGCTAA
GGGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5EL87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.594

100

0.67
  radA Streptococcus pneumoniae Rx1

58.94

99.56

0.587
  radA Streptococcus pneumoniae D39

58.94

99.56

0.587
  radA Streptococcus pneumoniae R6

58.94

99.56

0.587
  radA Streptococcus pneumoniae TIGR4

58.94

99.56

0.587
  radA Streptococcus mitis NCTC 12261

58.94

99.56

0.587
  radA Streptococcus mitis SK321

58.94

99.56

0.587