Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   A3UG_RS07920 Genome accession   NC_018079
Coordinates   1708413..1709039 (+) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae subsp. dissolvens SDM     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1703413..1714039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3UG_RS07900 (A3UG_07745) - 1703815..1705575 (-) 1761 WP_014831315.1 AAA family ATPase -
  A3UG_RS07905 (A3UG_07750) matP 1705762..1706214 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  A3UG_RS07910 (A3UG_07755) ompA 1706279..1707331 (-) 1053 WP_014831316.1 porin OmpA -
  A3UG_RS07915 (A3UG_07760) sulA 1707686..1708195 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  A3UG_RS07920 (A3UG_07765) sxy/tfoX 1708413..1709039 (+) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  A3UG_RS07925 (A3UG_07770) yccS 1708996..1711158 (-) 2163 WP_014831317.1 YccS family putative transporter -
  A3UG_RS07930 (A3UG_07775) - 1711178..1711624 (-) 447 WP_014831318.1 YccF domain-containing protein -
  A3UG_RS07935 (A3UG_07780) helD 1711747..1713801 (+) 2055 WP_014831319.1 DNA helicase IV -

Sequence


Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=51919 A3UG_RS07920 WP_013097255.1 1708413..1709039(+) (sxy/tfoX) [Enterobacter cloacae subsp. dissolvens SDM]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=51919 A3UG_RS07920 WP_013097255.1 1708413..1709039(+) (sxy/tfoX) [Enterobacter cloacae subsp. dissolvens SDM]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAAGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCAAAGTACTGTGTCAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGTCCGATCCTGCTTAAC
TACTATCGTGTGGATGACGGACTCTGGCAGGACCGGGAGCGGTTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAGCGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCTATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAGAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567


Multiple sequence alignment