Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SA40_RS06180 Genome accession   NC_022443
Coordinates   1268747..1269898 (+) Length   383 a.a.
NCBI ID   WP_000020366.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus SA40     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1263747..1274898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40_RS06150 (SA40_1152) - 1264040..1265326 (+) 1287 WP_000664781.1 pitrilysin family protein -
  SA40_RS06155 (SA40_1153) - 1265326..1266030 (+) 705 WP_000646223.1 SDR family NAD(P)-dependent oxidoreductase -
  SA40_RS06160 (SA40_1154) - 1266135..1266962 (+) 828 WP_000214892.1 YmfK family protein -
  SA40_RS06165 (SA40_1155) - 1266981..1267373 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  SA40_RS06170 (SA40_1156) pgsA 1267407..1267985 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SA40_RS06180 (SA40_1157) cinA 1268747..1269898 (+) 1152 WP_000020366.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SA40_RS06185 (SA40_1158) recA 1270063..1271106 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  SA40_RS06190 (SA40_1159) rny 1271460..1273019 (+) 1560 WP_001050913.1 ribonuclease Y -
  SA40_RS06195 (SA40_1160) - 1273316..1273531 (-) 216 WP_000026308.1 hypothetical protein -
  SA40_RS06200 (SA40_1161) - 1273705..1274502 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43269.65 Da        Isoelectric Point: 6.2381

>NTDB_id=51917 SA40_RS06180 WP_000020366.1 1268747..1269898(+) (cinA) [Staphylococcus aureus subsp. aureus SA40]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVSKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHKRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVPSAIILLEYDGVVYIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=51917 SA40_RS06180 WP_000020366.1 1268747..1269898(+) (cinA) [Staphylococcus aureus subsp. aureus SA40]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGATTAGGTCCTACGAAAGATGATTTAACGAAGCATACA
GTGGCCCAGATTGTTAGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAAACGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGCCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCTATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.428


Multiple sequence alignment