Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   IGS65_RS07005 Genome accession   NZ_CP066294
Coordinates   1413066..1413779 (+) Length   237 a.a.
NCBI ID   WP_002266885.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408066..1418779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS09710 - 1408847..1409185 (-) 339 Protein_1369 lipase -
  IGS65_RS06995 (IGS65_006995) treC 1409271..1410899 (-) 1629 WP_024785024.1 alpha,alpha-phosphotrehalase -
  IGS65_RS07000 (IGS65_007000) treP 1410925..1412892 (-) 1968 WP_002265239.1 PTS system trehalose-specific EIIBC component -
  IGS65_RS07005 (IGS65_007005) treR 1413066..1413779 (+) 714 WP_002266885.1 trehalose operon repressor Regulator
  IGS65_RS07010 (IGS65_007010) dexA 1414125..1416677 (-) 2553 WP_211093866.1 glycoside hydrolase family 66 protein -
  IGS65_RS07015 (IGS65_007015) dtd 1417162..1417608 (-) 447 WP_002262355.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27807.17 Da        Isoelectric Point: 9.7425

>NTDB_id=519142 IGS65_RS07005 WP_002266885.1 1413066..1413779(+) (treR) [Streptococcus mutans strain 27-3]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=519142 IGS65_RS07005 WP_002266885.1 1413066..1413779(+) (treR) [Streptococcus mutans strain 27-3]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-65)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.156

100

0.992