Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KZ795_RS02955 Genome accession   NZ_CP080286
Coordinates   654114..654710 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain UNC_PaerCF12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 649114..659710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ795_RS02935 (KZ795_02935) aroK 650245..650763 (-) 519 WP_003095833.1 shikimate kinase AroK -
  KZ795_RS02940 (KZ795_02940) pilQ 650775..652919 (-) 2145 WP_033977030.1 type 4a pilus secretin PilQ Machinery gene
  KZ795_RS02945 (KZ795_02945) comL/pilP 652973..653497 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  KZ795_RS02950 (KZ795_02950) pilO 653494..654117 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  KZ795_RS02955 (KZ795_02955) pilN 654114..654710 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  KZ795_RS02960 (KZ795_02960) pilM 654710..655774 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  KZ795_RS02965 (KZ795_02965) - 655959..658430 (+) 2472 WP_039026606.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=519141 KZ795_RS02955 WP_003095839.1 654114..654710(-) (pilN) [Pseudomonas aeruginosa strain UNC_PaerCF12]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=519141 KZ795_RS02955 WP_003095839.1 654114..654710(-) (pilN) [Pseudomonas aeruginosa strain UNC_PaerCF12]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAGCTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGGCGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGTGCAGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369